| find_tss | Predict TSSs of miRNA |
| peak_join | Integrate H3K4me3 data and Pol II data. |
| peak_merge | Merge adjacent peaks within H3K4me3 or Pol II data. |
| plot_primiRNA | Plot the result of prediction for miRNA |
| primirTSS | primirTSS: Search for putative TSSs of miRNA |
| run_primirTSSapp | Predict TSSs of miRNA using a graphical web interface. |
| trans_cor | transform one hg coordinates to another |