Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

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Documentation for package ‘projectR’ version 1.25.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

alluvialMat	alluvialMat
AP.RNAseq6l3c3t	CoGAPS patterns and genes weights for p.RNAseq6l3c3t
aucMat	aucMat
bonferroniCorrectedDifferences	bonferroniCorrectedDifferences
cluster2pattern	Generic cluster2pattern function
cluster2pattern-class	cluster2pattern
cluster2pattern-method	Generic cluster2pattern function
clusterPlotR	Generic clusterPlotR function
clusterPlotR-method	Generic clusterPlotR function
correlateR	correlateR
correlateR-class	correlateR
CR.RNAseq6l3c3t	CogapsResult object for p.RNAseq6l3c3t
cr_microglial	CogapsResult object for microglial_counts
geneMatchR	Generic geneMatchR function
getTSNE	getTSNE
getUMAP	getUMAP
glial_counts	log-normalized count data from astrocytes and oligodendrocytes in the p6 mouse cortex.
initialize-method	Constructor for cluster2pattern
initialize-method	Constructor for correlateR
initialize-method	Constructor for rotatoR
intersectoR	Generic intersectoR function
intersectoR-method	Generic intersectoR function
map.ESepiGen4c1l	RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
map.RNAseq6l3c3t	RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
microglial_counts	log-normalized count data from microglial cells in the p6 mouse cortex.
multivariateAnalysisR	Generic multivariateAnalysisR function
multivariateAnalysisR_seurat_test	Truncated Seurat Object with latent space projection done to unspecified cells in different stages for multivariateAnalysisR analysis
p.ESepiGen4c1l	RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
p.RNAseq6l3c3t	RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
pd.ESepiGen4c1l	RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
pd.RNAseq6l3c3t	RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
pdVolcano	pdVolcano
plotConfidenceIntervals	plotConfidenceIntervals
plotVolcano	plotVolcano
projectionDriveR	projectionDriveR
projectR	Generic projectR function
projectR-method	Generic projectR function
retinal_patterns	CoGAPS patterns learned from the developing mouse retina.
rotatoR	rotatoR
rotatoR-class	rotatoR