Statistical analysis of RNA editing sites and hyper-editing regions

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Documentation for package ‘rnaEditr’ version 1.19.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

AllCloseByRegions	Extract clusters of RNA editing sites located closely in genomic regions.
AllCoeditedRegions	Extracts contiguous co-edited genomic regions from input genomic regions .
AnnotateResults	Add Annotations to site-specific or region-based analysis results.
CreateEditingTable	Convert RNA editing matrix into a special data frame with class 'rnaEdit_df'.
rnaedit_df	Example breast cancer RNA editing dataset.
SummarizeAllRegions	Summarize RNA editing levels from multiple sites in regions.
TestAssociations	Test associations between phenotype and RNA editing levels.
TransformToGR	Transform gene symbols or region ranges into GRanges object.
t_rnaedit_df	Transposed breast cancer example dataset.