High Throughput Sequencing Cell Authentication Toolkit
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Documentation for package ‘seqCAT’ version 1.31.0
Help Pages
| seqCAT-package | seqCAT: High Throughput Sequencing Cell Authentication Toolkit |
| calculate_similarity | SNV profile similarity calculations |
| compare_many | Comparisons of many SNV profiles |
| compare_profiles | Binary SNV profile comparisons |
| create_profile | SNV profile creation |
| create_profiles | SNV profile creation |
| filter_duplicates | Variant de-duplication |
| filter_variants | Variant filtering |
| list_cosmic | List COSMIC sample names |
| list_variants | List known variants |
| plot_heatmap | Plot similarity heatmap |
| plot_impacts | Plot SNV impact distribution |
| plot_variant_list | Plot known variants list |
| read_cosmic | Read COSMIC data |
| read_profile | Read SNV profile |
| read_profiles | Read SNV profiles |
| seqCAT | seqCAT: High Throughput Sequencing Cell Authentication Toolkit |
| test_comparison | Overlapping and compared SNVs |
| test_profile_1 | SNV profile 1 |
| test_profile_2 | SNV profile 2 |
| test_profile_3 | SNV profile 3 |
| test_similarities | Collated similarities object |
| test_variant_list | Modified variant list object |
| write_profile | Write SNV profile |
| write_profiles | Write SNV profiles |