Metrics to estimate a level of similarity between two ChIP-Seq profiles

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Documentation for package ‘similaRpeak’ version 1.41.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

similaRpeak-package	similaRpeak: Metrics to estimate a level of similarity between two ChIP-Seq profiles
chr7Profiles	ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1 (for demonstration purpose)
demoProfiles	ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1 (for demonstration purpose)
DiffPosMax	DiffPosMax class
diffPosMaxMethod	Difference between two profiles maximal peaks positions
Metric	Metric class
MetricFactory	MetricFactory object
RatioArea	RatioArea class
ratioAreaMethod	Ratio of profiles area between two profiles
RatioIntersect	RatioIntersect class
ratioIntersectMethod	Ratio between the intersection area of two profiles and the total area covered by those profiles
RatioMaxMax	RatioMaxMax class
ratioMaxMaxMethod	Ratio of profiles maximal peaks between two profiles
RatioNormalizedIntersect	RatioNormalizedIntersect class
similarity	Calculate metrics which estimate the level of similarity between two ChIP-Seq profiles
similaRpeak	similaRpeak: Metrics to estimate a level of similarity between two ChIP-Seq profiles
SpearmanCorrelation	SpearmanCorrelation class
spearmanCorrMethod	Spearman's rho statistic of two profiles