Gene set analysis following differential expression using linear
(mixed) modeling with dream
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Documentation for package ‘zenith’ version 1.11.0
Help Pages
| .rankSumTestWithCorrelation | Two Sample Wilcoxon-Mann-Whitney Rank Sum Test Allowing For Correlation |
| corInGeneSet | Evaluate mean correlation between residuals in gene set |
| get_GeneOntology | Load Gene Ontology genesets |
| get_MSigDB | Load MSigDB genesets |
| plotZenithResults | Heatmap of zenith results using ggplot2 |
| zenith | Gene set analysis following differential expression with dream |
| zenithPR_gsa | Gene set analysis using pre-computed test statistic |
| zenith_gsa | Perform gene set analysis using zenith |
| zenith_gsa-method | Perform gene set analysis using zenith |