Package: EnhancedVolcano
Type: Package
Title: Publication-ready volcano plots with enhanced colouring and
        labeling
Version: 1.29.1
Authors@R: c(
    person("Kevin", "Blighe", role = c("aut")),
    person("Jared", "Andrews", email = "jared.andrews07@gmail.com", role = c("cre", "ctb"), comment = c(ORCID = "0000-0002-0780-6248")),
    person("Sharmila", "Rana", role = c("aut")),
    person("Emir", "Turkes", role = c("ctb")),
    person("Benjamin", "Ostendorf", role = c("ctb")),
    person("Andrea", "Grioni", role = c("ctb")),
    person("Myles", "Lewis", role = c("aut")))
Maintainer: Jared Andrews <jared.andrews07@gmail.com>
Description: Volcano plots represent a useful way to visualise the results of differential expression analyses. Here, we present a highly-configurable function that produces publication-ready volcano plots. EnhancedVolcano will attempt to fit as many point labels in the plot window as possible, thus avoiding 'clogging' up the plot with labels that could not otherwise have been read. Other functionality allows the user to identify up to 4 different types of attributes in the same plot space via colour, shape, size, and shade parameter configurations.
License: GPL-3
Encoding: UTF-8
Depends: ggplot2, ggrepel
Imports: methods, scales, grid, grDevices
Suggests: RUnit, ggrastr, BiocGenerics, knitr, DESeq2, pasilla, airway,
        org.Hs.eg.db, gridExtra, magrittr, rmarkdown
URL: https://github.com/kevinblighe/EnhancedVolcano
biocViews: RNASeq, GeneExpression, Transcription,
        DifferentialExpression, ImmunoOncology
VignetteBuilder: knitr
RoxygenNote: 7.3.2
git_url: https://git.bioconductor.org/packages/EnhancedVolcano
git_branch: devel
git_last_commit: b1f351b
git_last_commit_date: 2025-12-03
Repository: Bioconductor 3.23
Date/Publication: 2025-12-03
NeedsCompilation: no
Packaged: 2025-12-03 21:18:55 UTC; biocbuild
Author: Kevin Blighe [aut],
  Jared Andrews [cre, ctb] (ORCID:
    <https://orcid.org/0000-0002-0780-6248>),
  Sharmila Rana [aut],
  Emir Turkes [ctb],
  Benjamin Ostendorf [ctb],
  Andrea Grioni [ctb],
  Myles Lewis [aut]
Built: R 4.6.0; ; 2025-12-04 09:12:24 UTC; unix
