Easy single cell analysis platform for enrichment

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Documentation for package ‘escape’ version 2.5.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

densityEnrichment	Visualize Mean Density Ranking of Genes Across Gene Sets
enrichIt	Flexible GSEA for Precomputed Gene Lists
enrichItPlot	Adaptive visualisation of enrichIt results
escape.gene.sets	Built-In Gene Sets for escape
escape.matrix	Calculate Single-Cell Gene-Set Enrichment Scores
getGeneSets	Get a collection of gene sets from the msigdb
geyserEnrichment	Visualize Enrichment Distributions Using Geyser Plots
gseaEnrichment	Classical GSEA-style Running-Enrichment Plot
heatmapEnrichment	Visualize Enrichment Value Summaries Using Heatmaps
pcaEnrichment	Visualize the PCA of Enrichment Values
performNormalization	Perform Normalization on Enrichment Data
performPCA	Perform Principal Component Analysis on Enrichment Data
ridgeEnrichment	Visualize Enrichment Distributions Using Ridge Plots
runEscape	Calculate Enrichment Scores Using Seurat or SingleCellExperiment Objects
scatterEnrichment	Plot 2D Enrichment Distributions With Density or Hexplots
splitEnrichment	Plot Enrichment Distributions Using Split or Dodged Violin Plots