allPeptidesPlot         Create scatter plot
assignClusters          Create a data frames with cluster assignment
cleanData               Clean raw peptide complexomics data
clusterComp             Create components necessary for clustering
compranApp              Execute the complexomics Shiny app
exportClusterAssignments
                        Covert clustered tables into format for export
extractRepPeps          Extract Only Data Belonging to Representative
                        Peptide
getNormTable            Get normalised table for all proteins
groupHeatMap            Make heatmap
makeBarPlotClusterSummary
                        Title
makeDist                Make disstance matrix
normalizeTable          Convert extractRepPeps output to a Matrix
normTableForExport      Convert Normalized Dataframe to Export format
normTableWideToLong     Convert Normalized Dataframe To Long format
oneGroupTwoLabelsCoMigration
                        Compare a Single Group of Proteins Between Two
                        Label States
onlyInOneLabelState     Report Proteins Present In Only One Label State
peptideImport           Import raw peptide complexomics data
pickPeptide             Select Top Peptide For Various Scenarios
proteinPlot             Create Line Plots
protImportForAnalysis   Modify import protein data
simplifyProteins        Simplify Raw Proteins file
splitModLab             Split Modification and Label tags
toFilter                Optional Filtering For Raw Data
twoGroupsWithinLabelCoMigration
                        Compare a Two Groups of Proteins Within One
                        Label State
uncenteredCor           Perform uncentered correlation
