# Generated by roxygen2: do not edit by hand

S3method(as.DESeqDataSet,DGEList)
S3method(as.DGEList,DESeqDataSet)
export(DGEList)
export(as.DESeqDataSet)
export(as.DGEList)
export(simulateNormFactors)
export(simulateRnaSeqData)
exportMethods(DGEList)
import(data.table)
importClassesFrom(DESeq2,DESeqDataSet)
importClassesFrom(GenomicRanges,GenomicRanges_OR_GRangesList)
importClassesFrom(edgeR,DGEList)
importFrom(DESeq2,"normalizationFactors<-")
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,counts)
importFrom(DESeq2,design)
importFrom(DESeq2,makeExampleDESeqDataSet)
importFrom(DESeq2,normalizationFactors)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,makeGRangesListFromDataFrame)
importFrom(S4Vectors,DataFrame)
importFrom(SummarizedExperiment,"mcols<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,as.data.frame)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(SummarizedExperiment,rowRanges)
importFrom(checkmate,qassert)
importFrom(edgeR,DGEList)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setAs)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(stats,formula)
importFrom(stats,runif)
importFrom(stats,terms)
