| clusterSim | clusterSim |
| computeIC | compute information content |
| DataSet | Datasets |
| doseSim | doseSim |
| dose_params | Shared parameters for DOSE functions |
| doSim | doseSim |
| enrichDO | DO Enrichment Analysis |
| enrichNCG | enrichNCG |
| gene2DO | convert Gene ID to DO Terms |
| geneList | Datasets |
| geneSim | geneSim |
| gseDO | DO Gene Set Enrichment Analysis |
| gseNCG | NCG Gene Set Enrichment Analysis |
| mclusterSim | mclusterSim |
| simplot | simplot |
| theme_dose | theme_dose |