# Generated by roxygen2: do not edit by hand

export(AggrHiCExperiment)
export(CoolFile)
export(HiCExperiment)
export(HicFile)
export(HicproFile)
export(PairsFile)
export(as)
export(cm2matrix)
export(contacts_yeast)
export(contacts_yeast_eco1)
export(df2gi)
export(gi2cm)
export(makeHiCExperimentFromGInteractions)
export(metadata)
exportClasses(AggrHiCExperiment)
exportClasses(CoolFile)
exportClasses(HiCExperiment)
exportClasses(HicFile)
exportClasses(HicproFile)
exportClasses(McoolFile)
exportClasses(PairsFile)
exportMethods("$")
exportMethods("$<-")
exportMethods("[")
exportMethods("focus<-")
exportMethods("interactions<-")
exportMethods("metadata<-")
exportMethods("pairsFile<-")
exportMethods("scores<-")
exportMethods("topologicalFeatures<-")
exportMethods(anchors)
exportMethods(as.data.frame)
exportMethods(as.matrix)
exportMethods(availableChromosomes)
exportMethods(availableResolutions)
exportMethods(bins)
exportMethods(cis)
exportMethods(export)
exportMethods(fileName)
exportMethods(focus)
exportMethods(import)
exportMethods(interactions)
exportMethods(length)
exportMethods(pairsFile)
exportMethods(refocus)
exportMethods(regions)
exportMethods(resolution)
exportMethods(resolutions)
exportMethods(scores)
exportMethods(seqinfo)
exportMethods(show)
exportMethods(slices)
exportMethods(subsetByOverlaps)
exportMethods(topologicalFeatures)
exportMethods(trans)
exportMethods(zoom)
import(InteractionSet)
import(methods)
import(rhdf5)
import(strawr)
importClassesFrom(BiocIO,BiocFile)
importClassesFrom(GenomicRanges,GRanges)
importClassesFrom(InteractionSet,GInteractions)
importClassesFrom(S4Vectors,Annotated)
importFrom(BiocGenerics,path)
importFrom(BiocIO,export)
importFrom(BiocIO,import)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,bplapply)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,resize)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(IRanges,IRanges)
importFrom(IRanges,subsetByOverlaps)
importFrom(Matrix,as.matrix)
importFrom(S4Vectors,Pairs)
importFrom(S4Vectors,isSingleString)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,subjectHits)
importFrom(S4Vectors,zipdown)
importFrom(S4Vectors,zipup)
importFrom(Seqinfo,Seqinfo)
importFrom(Seqinfo,seqinfo)
importFrom(Seqinfo,seqlengths)
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarize)
importFrom(methods,is)
importFrom(methods,setClass)
importFrom(stats,complete.cases)
importFrom(vroom,vroom)
importMethodsFrom(BiocGenerics,fileName)
importMethodsFrom(S4Vectors,metadata)
