calcSpm                 KCsmart wrapper
calcSpmCollection       KCsmart Comparative wrapper
compareSpmCollection    KCsmart Comparative calculate null distribution
compKc-class            KC smart comparative
compKcSigRegions-class
                        KC smart comparative
findSigLevelFdr         This function has not been properly implemented
                        yet
findSigLevelTrad        Find significance level
getSigRegionsCompKC     KCsmart Comparative calculate the signficant
                        regions
getSigSegments          Retrieve the significantly gained and lost
                        regions including the corresponding, original
                        probes
hsMirrorLocs            Mirror locations of the human genome
hsSampleData            Homo Sapiens artificial cgh data set
idPoints                Identify points in sample point matrix plot
KCData-class            Internal class "KCData"
KcghData-class          Class "KcghData"
KcghDataMirror-class    Class "KcghDataMirror"
KcghDataSplit-class     Class "KcghDataSplit"
KcghDataSum-class       Class "KcghDataSum"
KCsmart-package         KCsmart
mmMirrorLocs            Mirror locations of the mouse genome
plot                    Plot a sample point matrix
plotScaleSpace          Plot multiple significant regions in one figure
probeAnnotation-class   Class "probeAnnotation"
samplePointMatrix-class
                        Sample point matrix
sigSegments-class       Significant segments
spmCollection-class     Sample point matrix collection
write.table             Write summary of the significant regions to a
                        table
