Integrative Multi-Omics Analysis of Host Transcriptomics and Gut Microbiome Data

[Up] [Top]

Documentation for package ‘MultiOmicsBridge’ version 0.99.1

Help Pages

MultiOmicsBridge-package MultiOmicsBridge: Integrative Multi-Omics Analysis of Host Transcriptomics and Gut Microbiome Data
biomarkerDiscovery Multi-Omics Biomarker Discovery
biomarkers Accessor for biomarker table in a MOBResult
biomarkers-method Accessor for biomarker table in a MOBResult
diagnosticClassifier Integrated Diagnostic Classifier with Multi-Omics Comparison
example_multiomics Example Multi-Omics Dataset for MultiOmicsBridge
featureLoadings Accessor for feature loadings in a MOBResult
featureLoadings-method Accessor for feature loadings in a MOBResult
generateReport Generate a Structured Summary Report of MultiOmicsBridge Results
integrationScores Accessor for integrated sample scores in a MOBResult
integrationScores-method Accessor for integrated sample scores in a MOBResult
jointDimReduction Joint Dimensionality Reduction via Sparse Multi-Block PLS-DA
loadHostData Load and Normalize Host Bulk RNA-seq Data
loadMicrobiomeData Load and Normalize Microbiome Taxa Table Data
matchSamples Match Paired Samples Across Host and Microbiome Datasets
MOBResult Constructor for MOBResult
MOBResult-class MOBResult: Multi-Omics Bridge Result Container
MultiOmicsBridge MultiOmicsBridge: Integrative Multi-Omics Analysis of Host Transcriptomics and Gut Microbiome Data
MultiOmicsBridgeAnalysis Full Multi-Omics Integration Analysis Pipeline
performance Accessor for classifier performance in a MOBResult
performance-method Accessor for classifier performance in a MOBResult
plotBiomarkerNetwork Cross-Omics Biomarker Correlation Heatmap
plotClassifierComparison ROC Curve Comparison of Host-Only, Microbiome-Only, and Joint Classifiers
plotIntegration Joint Biplot of Multi-Omics Integration Results
plotSankey Feature Flow Diagram: Omics Layer to Biomarkers to Outcome
show-method Show method for MOBResult