Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)

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Documentation for package ‘PADOG’ version 1.55.1

• DESCRIPTION file
• User guides, package vignettes and other documentation

Help Pages

compPADOG	Benchmark for gene set analysis methods introduced by Tarca et al. in the PADOG package
filteranot	Remove duplicate probesets/probes from an gene expression matrix based on p-values from a moderated t-test, in order to apply a gene set analysis.
loadCompPADOGBenchmark	Benchmark for gene set analysis methods
padog	Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)