# Generated by roxygen2: do not edit by hand

export("GeneSymbol<-")
export("Localisation<-")
export("Residue<-")
export("Sequence<-")
export("Site<-")
export("UniprotID<-")
export(GeneSymbol)
export(Localisation)
export(PhosphoExperiment)
export(RUVphospho)
export(RUVproteome)
export(Residue)
export(Sequence)
export(Signalomes)
export(Site)
export(UniprotID)
export(createFrequencyMat)
export(frequencyScoring)
export(getSPS)
export(kinaseSubstrateHeatmap)
export(kinaseSubstratePred)
export(kinaseSubstrateProfile)
export(kinaseSubstrateScore)
export(mIntersect)
export(mUnion)
export(matANOVA)
export(meanAbundance)
export(medianScaling)
export(minmax)
export(pathwayOverrepresent)
export(pathwayRankBasedEnrichment)
export(phosCollapse)
export(plotKinaseNetwork)
export(plotQC)
export(plotSignalomeMap)
export(ptImpute)
export(scImpute)
export(selectGrps)
export(selectLocalisedSites)
export(selectOverallPercent)
export(selectTimes)
export(siteAnnotate)
export(standardise)
export(tImpute)
exportClasses(PhosphoExperiment)
exportMethods("GeneSymbol<-")
exportMethods("Localisation<-")
exportMethods("Residue<-")
exportMethods("Sequence<-")
exportMethods("Site<-")
exportMethods("UniprotID<-")
exportMethods("[")
exportMethods("[<-")
exportMethods(GeneSymbol)
exportMethods(Localisation)
exportMethods(Residue)
exportMethods(Sequence)
exportMethods(Site)
exportMethods(UniprotID)
exportMethods(cbind)
exportMethods(rbind)
import(circlize)
import(e1071)
import(pheatmap)
import(stats)
importClassesFrom(S4Vectors,DataFrame)
importClassesFrom(S4Vectors,SimpleList)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(BiocGenerics,cbind)
importFrom(BiocGenerics,rbind)
importFrom(GGally,ggnet2)
importFrom(RColorBrewer,brewer.pal)
importFrom(S4Vectors,SimpleList)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(dendextend,labels_colors)
importFrom(dplyr,"%>%")
importFrom(dplyr,count)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(ggdendro,ggdendrogram)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_size_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggpubr,ggarrange)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,rainbow)
importFrom(graphics,barplot)
importFrom(graphics,par)
importFrom(graphics,title)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(limma,normalizeMedianAbsValues)
importFrom(methods,as)
importFrom(methods,callNextMethod)
importFrom(methods,is)
importFrom(methods,new)
importFrom(network,network)
importFrom(pcaMethods,pca)
importFrom(preprocessCore,normalize.quantiles)
importFrom(reshape2,melt)
importFrom(rlang,.data)
importFrom(ruv,RUVIII)
importFrom(stats,cor)
importFrom(stats,hclust)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,spread)
importFrom(utils,data)
importFrom(utils,stack)
importFrom(utils,tail)
