calculate_qvalues       Calculate FDRs for a given vector of p-values
                        with qvalue, fallback to BH adjustment if
                        qvalue fails. Default to BH in case of less
                        than 200 p-values.
check_for_polystest     Check SummarizedExperiment for PolySTest
                        Requirements
check_stat_names        Check Statistical Test and Comparison Names
create_pairwise_comparisons
                        Create All Pairwise Comparisons
FindFCandQlimAlternative
                        Function to determine "optimal" fold-change and
                        q-value thresholds using a higher criticism
                        method and an FC threshold based on a standard
                        deviation of one
get_numthreads          Set number of threads (default is 4)
limma_paired            Perform paired limma analysis
limma_unpaired          Perform unpaired limma analysis
liver_example           Example data set liver_example for PolySTest
MissingStats            Calculates the p-values and q-values for
                        missing values in a data frame with columns as
                        samples and rows as features.
MissingStatsDesign      Function of calculation of Miss tests. This
                        happens between full groups and thus does not
                        have distinction for pairwise testing.
MissValPDistr           Calculate the distribution of missing values
perm_unpaired           Perform unpaired permutation tests
permtest_paired         Perform permutation tests
plotExpression          Plot Expression Profiles
plotHeatmaply           Heatmap Visualization with Heatmaply
plotPvalueDistr         Plot P-Value Distributions
plotRegNumber           Plot Number of Regulated Features
plotUpset               Plot UpSet
plotVolcano             Plot Volcano Plots for PolySTest results
PolySTest_paired        PolySTest for Paired Tests
PolySTest_unpaired      PolySTest for unpaired tests
rp_unpaired             Perform unpaired rank products test
RPStats                 RPStats Function
set_mfrow               Set Graphics Layout
StatsForPermutTest      Calculate statistics for permutation test
ttest_paired            Perform paired t-tests
ttest_unpaired          Perform unpaired t-tests on two datasets
update_conditions_with_lcs
                        Update Conditions with Longest Common
                        Subsequence
