Package: RBPSpecificity
Type: Package
Title: RBP Inherent Specificity and Variation Sensitivity Analysis Tool
Version: 0.99.6
Description: 
    Provides tools to analyze RNA Binding Protein (RBP) binding specificities
    from high-throughput sequencing data. Functions include calculating
    K-mer enrichment, Inherent Specificity (IS), and Mutational
    Sensitivity (VS), along with visualization of IS and VS.
    For detailed methodology and applications, please refer to our manuscript
    (see URL field or vignette).
License: GPL-3
Encoding: UTF-8
biocViews: Software, MotifAnnotation, Sequencing, Coverage,
        GenomeAnnotation, Visualization, GeneRegulation, KEGG
BugReports: https://github.com/S00NYI/RBPSpecificity/issues
URL: https://www.biorxiv.org/content/10.1101/2025.03.28.646018v2,
        https://github.com/S00NYI/RBPSpecificity,
        https://github.com/S00NYI/BITS_Specificity
Authors@R: 
    c(person("Soon", "Yi", , "cu.soonyi@gmail.com", role = c("aut", "cre"),
             comment = c(ORCID = "0000-0002-4535-6532")),
      person("National Institutes of Health", role = "fnd", comment = "T32 GM152319"))
Depends: R (>= 4.6.0)
Imports: Biostrings, BSgenome, GenomeInfoDb, GenomicRanges, ggplot2,
        methods, reshape2, S4Vectors, stats, utils
Suggests: BiocStyle, BSgenome.Hsapiens.UCSC.hg38, IRanges, knitr,
        rmarkdown, testthat
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0
git_url: https://git.bioconductor.org/packages/RBPSpecificity
git_branch: devel
git_last_commit: e1b8712
git_last_commit_date: 2026-07-18
Repository: Bioconductor 3.24
Date/Publication: 2026-07-20
NeedsCompilation: no
Packaged: 2026-07-20 22:20:52 UTC; biocbuild
Author: Soon Yi [aut, cre] (ORCID: <https://orcid.org/0000-0002-4535-6532>),
  National Institutes of Health [fnd] (T32 GM152319)
Maintainer: Soon Yi <cu.soonyi@gmail.com>
Built: R 4.6.1; ; 2026-07-21 05:46:45 UTC; unix
