[,ToxicoSet,ANY,ANY,ANY-method
                        '['
availableTSets          Return a table of ToxicoSets available for
                        download
checkTSetStructure      A function to verify the structure of a
                        ToxicoSet
computeAUC              Computes the AUC for a Drug Dose Viability
                        Curve
computeIC50             Computes the ICn for any n in 0-100 for a Drug
                        Dose Viability Curve
computeLimmaDiffExpr    Generic method for performing differential
                        expression analysis on an S4 object using the
                        limma package
computeLimmaDiffExpr,ToxicoSet-method
                        Conduct differential expression analysis using
                        the limma R pacakge
dim,ToxicoSet-method    Get the dimensions of a ToxicoSet
downloadTSet            Download a ToxicoSet object
drugGeneResponseCurve   Compares gene expression for a specificed set
                        of features over specific drug dosages vs time
drugPerturbationSig     Drug perturbation analysis
drugTimeResponseCurve   Compares viabilities at a given dose over
                        different experimental durations
HCC_sig                 HCC_sig dataset
logLogisticRegression   Fits curves of the form E = E_inf + (1 -
                        E_inf)/(1 + (c/EC50)^HS) to dose-response data
                        points (c, E) given by the user and returns a
                        vector containing estimates for HS, E_inf, and
                        EC50.
show,ToxicoSet-method   Show a ToxicoSet
show,ToxicoSig-method   Show ToxicoGx Signatures
showSigAnnot            Show the Annotations of a signature object
subsetTo                A function to subset a ToxicoSet to data
                        containing only specified drugs, cells and
                        genes
summarizeMolecularProfiles
                        Takes molecular data from a ToxicoSet, and
                        summarises them into one entry per drug and
                        experimental condition.
summarizeSensitivityProfiles
                        Takes the sensitivity data from a ToxicoSet,
                        and summarises them into a drug vs cell line
                        table
TGGATESsmall            TGGATESsmall dataset
ToxicoSet               ToxicoSet constructor
ToxicoSet-accessors     Accessing and modifying information in a
                        'CoreSet'
ToxicoSet-class         Class to contain Toxico-genomic Data
updateObject,ToxicoSet-method
                        Update the ToxicoSet class after changes in it
                        struture or API
