# Generated by roxygen2: do not edit by hand

S3method(plot,bnem)
S3method(plot,bnemBs)
S3method(plot,bnemsim)
export(absorption)
export(absorptionII)
export(addNoise)
export(bnem)
export(bnemBs)
export(computeFc)
export(convertGraph)
export(dummyCNOlist)
export(epiNEM2Bg)
export(findResiduals)
export(processDataBCR)
export(randomDnf)
export(reduceGraph)
export(scoreDnf)
export(simBoolGtn)
export(simulateStatesRecursive)
export(transClose)
export(transRed)
export(validateGraph)
import(CellNOptR)
import(RColorBrewer)
import(cluster)
import(epiNEM)
import(graph)
import(matrixStats)
import(methods)
import(mnem)
import(snowfall)
import(stats)
importFrom(Biobase,exprs)
importFrom(Biobase,rowMax)
importFrom(Biobase,rowMin)
importFrom(Rgraphviz,lines)
importFrom(affy,ReadAffy)
importFrom(affy,list.celfiles)
importFrom(affy,rma)
importFrom(binom,binom.confint)
importFrom(flexclust,dist2)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,legend)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,screen)
importFrom(graphics,split.screen)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(matrixStats,rowMaxs)
importFrom(matrixStats,rowMins)
importFrom(mnem,plotDnf)
importFrom(sva,ComBat)
importFrom(utils,combn)
importFrom(utils,glob2rx)
importFrom(utils,write.table)
importFrom(vsn,justvsn)
