absorption              Absorption
absorptionII            Inverse absorption
addNoise                Add noise
bcr                     B-Cell receptor signalling perturbations
bnem                    Boolean Nested Effects Model main function
bnemBs                  Bootstraped Network
computeFc               Compute differential effects
convertGraph            Convert normal form
dummyCNOlist            Create dummy CNOlist
epiNEM2Bg               Switch between epiNEM and B-NEM
findResiduals           Compute residuals
plot.bnem               plot bnem opbject
plot.bnemBs             Plot Bootstrap result
plot.bnemsim            plot simulation object
processDataBCR          BCR perturbation reproduction
randomDnf               sample normal form
reduceGraph             Reduce graph
scoreDnf                score a boolean network
simBoolGtn              Sample random network and simulate data
simulateStatesRecursive
                        Simulate states
transClose              transitive closure
transRed                transitive reduction
validateGraph           validate graph
