An Interface for Immune Receptor and HLA Gene IMGT Reference Data

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Documentation for package ‘immReferent’ version 0.99.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

immReferent-package	immReferent: An Interface for Immune Receptor and HLA Gene Reference Data
getIMGT	Download and Load Immune Receptor and HLA Sequences from IMGT
getOGRDB	Download and Load Immune Receptor Germline Sequences from OGRDB (AIRR)
immReferent	immReferent: An Interface for Immune Receptor and HLA Gene Reference Data
is_imgt_available	Check if IMGT Website is Available
is_ogrdb_available	Check if OGRDB Website is Available
listIMGT	List Datasets in the Local Cache
listOGRDB	List OGRDB Datasets in Local Cache
loadIMGT	Load Cached IMGT/HLA Sequences
loadOGRDB	Load Cached OGRDB Sequences
refreshIMGT	Force Re-download of IMGT/HLA Sequences
refreshOGRDB	Force Re-download of OGRDB Sequences