path2path-package	path2path-package
as_path2path_matrix	as_path2path_matrix
as_path2path_se	as_path2path_se
bh_populated	bh_populated
build_null_pool	build_null_pool
calibrate_pvalues	calibrate_pvalues
dataset_tag	dataset_tag
demo_pathways	demo_pathways
demo_z	demo_z
jaccard_mask	jaccard_mask
load_pathways	load_pathways
order_by_activity	order_by_activity
path2path	path2path
pathway_jaccard	pathway_jaccard
permute_input	permute_input
plot_calibration	plot_calibration
plot_entry	plot_entry
plot_map	plot_map
read_input_matrix	read_input_matrix
select_active	select_active
stage1_nes	stage1_nes
stage2_matrix	stage2_matrix
write_result	write_result
