R: Model-Based Comparative Analysis of the TCR Repertoire

# Model-Based Comparative Analysis of the TCR Repertoire

## Documentation for package ‘powerTCR’ version 1.33.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

clusterPlot | Visualize hierarchical clustering of samples
ddiscgammagpd | The discrete gamma-GPD spliced threshold distribution
fdesponds | Fit the type-I Pareto distribution as according to Desponds et al. (2016)
fdiscgammagpd | Fit the discrete gamma-GPD spliced threshold model
get_bootstraps | Get bootstrapped fits for a list of fitted models
get_distances | Compute matrix of pairwise Jensen-Shannon Distances
get_diversity | Grab important output from a list of fits
get_mle | Grab important output from a list of fits
get_nllh | Grab important output from a list of fits
JS_desponds | Compute the Jensen-Shannon distance between two fitted distributions using the Desponds model
JS_dist | Compute the Jensen-Shannon distance between two model fits
JS_spliced | Compute the Jensen-Shannon distance between two fitted discrete gamma-GPD spliced threshold distributions
parseFile | Load in and parse TCR data files for use by powerTCR
parseFolder | Load in and parse TCR data files for use by powerTCR
pdiscgammagpd | The discrete gamma-GPD spliced threshold distribution
qdiscgammagpd | The discrete gamma-GPD spliced threshold distribution
rdiscgammagpd | The discrete gamma-GPD spliced threshold distribution
repertoires | Two toy examples of sample TCR repertoires.