Model-Based Comparative Analysis of the TCR Repertoire

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Documentation for package ‘powerTCR’ version 1.33.3

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

clusterPlot	Visualize hierarchical clustering of samples
ddiscgammagpd	The discrete gamma-GPD spliced threshold distribution
fdesponds	Fit the type-I Pareto distribution as according to Desponds et al. (2016)
fdiscgammagpd	Fit the discrete gamma-GPD spliced threshold model
get_bootstraps	Get bootstrapped fits for a list of fitted models
get_distances	Compute matrix of pairwise Jensen-Shannon Distances
get_diversity	Grab important output from a list of fits
get_mle	Grab important output from a list of fits
get_nllh	Grab important output from a list of fits
JS_desponds	Compute the Jensen-Shannon distance between two fitted distributions using the Desponds model
JS_dist	Compute the Jensen-Shannon distance between two model fits
JS_spliced	Compute the Jensen-Shannon distance between two fitted discrete gamma-GPD spliced threshold distributions
pdiscgammagpd	The discrete gamma-GPD spliced threshold distribution
qdiscgammagpd	The discrete gamma-GPD spliced threshold distribution
rdiscgammagpd	The discrete gamma-GPD spliced threshold distribution
repertoires	Two toy examples of sample TCR repertoires.