## IMPORTS
import(methods)
import(stats)
import(utils)
import(graphics)
import(plyr)
import(DNAcopy)
import(lattice)
import(ggplot2)
import(shiny)
import(org.Hs.eg.db)
import(TxDb.Hsapiens.UCSC.hg18.knownGene)
import(TxDb.Hsapiens.UCSC.hg19.knownGene)
import(TxDb.Hsapiens.UCSC.hg38.knownGene)
import(Seqinfo)
import(GenomicRanges)
import(GenomicFeatures)
import(AnnotationDbi)


## IMPORTS FROM
importFrom("grid", "grid.newpage")
importFrom("grid", "pushViewport")
importFrom("grid", "viewport")
importFrom("grid", "grid.layout")
importFrom("grid", "unit")
importFrom("limma", "loessFit")
importFrom("affy", "tukey.biweight")
importFrom("mclust", "Mclust")
importFrom("mclust", "mclustBIC")
importFrom("mclust", "priorControl")
importFrom("mclust", "emControl")
importFrom("parallel", "mclapply")
importFrom("parallel", "detectCores")
importFrom("IRanges", "IRanges")
importFrom("grDevices", "rgb")
importFrom("aCGH", "mergeLevels")


## EXPORT METHODS
exportPattern("^[[:alpha:]]+")

