R: An R interface to the Rfam database

# An R interface to the Rfam database

## Documentation for package ‘rfaRm’ version 1.25.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

rfamConsensusSecondaryStructure | Retrieve the secondary structure of an Rfam family
rfamCovarianceModel | Get the covariance model associated to an Rfam family
rfamFamilyAccessionToID | Convert an Rfam family accession to an Rfam family ID
rfamFamilyIDToAccession | Convert an Rfam family ID to an Rfam family accession
rfamFamilySummary | Get a summary describing an Rfam family
rfamPDBMapping | Retrieve PDB entries with the 3D structure of members of an Rfam family
rfamSecondaryStructurePlot | Generate a diagram of the secondary structure of an Rfam family
rfamSecondaryStructureXMLSVG | Get an SVG file with a secondary structure representation of an Rfam family
rfamSeedAlignment | Retrieve the seed alignment of an Rfam family
rfamSeedTree | Get the phylogenetic tree of the seed multiple alignment of an Rfam family
rfamSeedTreeImage | Get an image of the phylogenetic tree of the seed multiple alignment of an Rfam family
rfamSequenceRegions | Retrieve all sequence regions belonging to an Rfam family
rfamSequenceSearch | Performs a sequence search of the Rfam database
rfamTextSearchFamilyAccession | Search the Rfam database by a given keyword