chromatogram_overwrite
                        Static base-R chromatogram renderer with a
                        corrected color palette.
chromatogram_plotly     Render a Sanger chromatogram as an interactive
                        Plotly widget
ChromatogramParam-class
                        ChromatogramParam
generateReport          Method generateReport
generateReportSA        Method generateReportSA
generateReportSC        Method generateReportSC
generateReportSR        Method generateReportSR
globalTrimApp           Launch a global trimming controls dashboard
launchApp               Method launchApp
launchAppSA             Method launchAppSA
launchAppSC             Method launchAppSC
MakeBaseCalls           Method MakeBaseCalls
ObjectResults-class     ObjectResults
primaryAASeqS1          Method primaryAASeqS1
primaryAASeqS2          Method primaryAASeqS2
primaryAASeqS3          Method primaryAASeqS3
qualityBasePlot         Method qualityBasePlot
QualityReport-class     QualityReport
QualityReport-class-qualityBasePlot
                        qualityBasePlot
QualityReport-class-updateQualityParam
                        updateQualityParam
qualityReportData       QualityReport instance
readTable               Method readTable
SangerAlignment         SangerAlignment
SangerAlignment-class   SangerAlignment
SangerAlignment-class-generateReportSA
                        generateReportSA
SangerAlignment-class-launchAppSA
                        launchAppSA
SangerAlignment-class-updateQualityParam
                        updateQualityParam
SangerAlignment-class-writeFastaSA
                        writeFastaSA
sangerAlignmentData     SangerAlignment instance
sangeranalyseR          sangeranalyseR-package
SangerContig            SangerContig
SangerContig-class      SangerContig
SangerContig-class-generateReportSC
                        generateReportSC
SangerContig-class-launchAppSC
                        launchAppSC
SangerContig-class-readTable
                        readTable
SangerContig-class-updateQualityParam
                        updateQualityParam
SangerContig-class-writeFastaSC
                        writeFastaSC
sangerContigData        SangerContig instance
SangerRead              SangerRead
SangerRead-class        SangerRead
SangerRead-class-generateReportSR
                        generateReportSR
SangerRead-class-MakeBaseCalls
                        MakeBaseCalls
SangerRead-class-qualityBasePlot
                        qualityBasePlot
SangerRead-class-readTable
                        readTable
SangerRead-class-updateQualityParam
                        updateQualityParam
SangerRead-class-writeFastaSR
                        writeFastaSR
sangerReadFData         SangerRead instance
updateQualityParam      Method updateQualityParam
writeFasta              Method writeFasta
writeFastaSA            Method writeFastaSA
writeFastaSC            Method writeFastaSC
writeFastaSR            Method writeFastaSR
