Explainable Confidence Scoring for Single-Cell Annotations
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Documentation for package ‘scCertify’ version 0.99.9
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| scCertify-package | scCertify: Explainable Confidence Scoring for Single-Cell Annotations |
| calibrate_confidence | Calibrate Confidence Scores |
| cell_certify | Cell Annotation Confidence |
| classify_confidence | Classify Confidence Levels |
| de_novo_signatures | Cluster-Enriched Gene Signatures |
| discovery_aware | Discovery-Aware Annotation Analysis |
| discovery_status | Discovery-Aware Annotation Status |
| entropy_score | Entropy-Based Uncertainty Score |
| explain_cell | Explain Cell Annotation Confidence |
| explain_confidence | Explain Confidence Attribution |
| marker_score | Marker Consistency Score |
| match_labels | Ontology Label Matching |
| negative_marker_score | Negative Marker Consistency Score |
| neighbor_score | Neighbor Agreement Score |
| scCertify | scCertify: Explainable Confidence Scoring for Single-Cell Annotations |