liver                   Liver trajectory example data
MOB_subset              MOB_subset spatial example data
params<-                Setter functions for scHOT objects
plotColouredExpression
                        plotColouredExpression
plotEgoNetwork          plotEgoNetwork
plotHigherOrderSequence
                        plotHigherOrderSequence
plotOrderedExpression   plotOrderedExpression
positionColData<-       Setter functions for scHOT objects
positionType<-          Setter functions for scHOT objects
scHOT                   scHOT
scHOT_addTestingScaffold
                        scHOT_addTestingScaffold
scHOT_buildFromMatrix   scHOT_buildFromMatrix
scHOT_buildFromSCE      scHOT_buildFromSCE
scHOT_calculateGlobalHigherOrderFunction
                        scHOT_calculateGlobalHigherOrderFunction
scHOT_calculateHigherOrderTestStatistics
                        scHOT_calculateHigherOrderTestStatistics
scHOT_estimatePvalues   scHOT_estimatePvalues
scHOT_output<-          Setter functions for scHOT objects
scHOT_performPermutationTest
                        scHOT_performPermutationTest
scHOT_plotPermutationDistributions
                        scHOT_plotPermutationDistributions
scHOT_setPermutationScaffold
                        scHOT_setPermutationScaffold
scHOT_setWeightMatrix   scHOT_setWeightMatrix
scHOT_stripOutput       scHOT_stripOutput
scHOT-class             scHOT class
spatialWeightMatrix     spatialWeightMatrix
testingScaffold<-       Setter functions for scHOT objects
thin                    thin
trajectoryWeightMatrix
                        trajectoryWeightMatrix
weightedPearson         weightedPearson
weightedSpearman        weightedSpearman
weightedVariance        weightedVariance
weightedZIKendall       weightedZIKendall
weightedZISpearman      weightedZISpearman
weightMatrix<-          Setter functions for scHOT objects
