Package: scOverlay
Type: Package
BiocType: Software
Title: Multilayer Plots for Single-Cell Data
Version: 0.99.5
Authors@R: 
    c(person(given = "Bernat", family = "Gel", role = c("aut", "cre"),
             email = "bgel@igtp.cat",
             comment = c(ORCID = "0000-0001-8878-349X")))
Description: scOverlay provides publication-grade plotting helpers to display a
    foreground feature (gene expression or metadata) on top of a contextual
    background (clusters, cell types, samples, or a solid colour) in the same reduced
    dimension panel, each with independent colour scales (via ggnewscale).
    It integrates with SingleCellExperiment / SummarizedExperiment, supports
    flexible subsetting of foreground cells, multiple assays (e.g. counts,
    logcounts), and grid arrangements by user-defined grouping columns.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.6.0)
Imports: ggplot2, ggnewscale, SummarizedExperiment,
        SingleCellExperiment, viridisLite, scales, RColorBrewer,
        patchwork, ggrastr, rlang
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
URL: https://github.com/bernatgel/scOverlay
BugReports: https://github.com/bernatgel/scOverlay/issues
biocViews: Software, Visualization, SingleCell, Transcriptomics,
        GeneExpression, DataRepresentation
Config/testthat/edition: 3
Config/roxygen2/version: 8.1.0
git_url: https://git.bioconductor.org/packages/scOverlay
git_branch: devel
git_last_commit: 17dd0b4
git_last_commit_date: 2026-10-20
Repository: Bioconductor 3.24
Date/Publication: 2026-10-27
NeedsCompilation: no
Packaged: 2026-10-27 23:06:11 UTC; biocbuild
Author: Bernat Gel [aut, cre] (ORCID: <https://orcid.org/0000-0001-8878-349X>)
Maintainer: Bernat Gel <bgel@igtp.cat>
Built: R 4.6.1; ; 2026-10-28 12:55:06 UTC; unix
