addPerROIQC             Add QC statistics to the Spatial Experiment
                        object
computeClusterEvalStats
                        Calculate statistics for evaluating batch
                        correction
drawPCA                 Compute and plot the results of a PCA analysis
                        on gene expression data
findBestK               Testing multiple K for RUV4 batch correction to
                        find the best K.
findNCGs                Get negative control genes from each batch of
                        the data
geomxBatchCorrection    Batch correction for GeoMX data
geomxNorm               Perform normalization to GeoMX data
plotClusterEvalStats    Compare and evaluate different batch corrected
                        data with plotting.
plotDR                  Compute and plot the results of any dimension
                        reduction methods on gene expression data
plotGeneQC              Plot gene-wise QC plot
plotMDS                 Compute and plot the results of a MDS analysis
                        on gene expression data
plotPairPCA             Plot pair-wise PCA plots for multiple
                        dimensions
plotPCAbiplot           Plot PCA bi plot
plotRLExpr              Compute and plot relative log expression (RLE)
                        values of gene expression data
plotROIQC               Plot Sample-wise QC plot
plotSampleInfo          Plot the user-defined meta data using alluvium
                        plot
plotScreePCA            Plot the PCA scree plot.
prepareSpatialDecon     Preparing the inputs for SpatialDecon for doing
                        deconvolution on spatial data
readGeoMx               Import GeoMX DSP data into a saptial experiment
                        object from file paths
readGeoMxFromDGE        Import GeoMX DSP data into a spatial experiment
                        object from DGEList object
spe2dge                 Transfer SpatialExperiment object into DGEList
                        object for DE analysis
