R: VirtUaL ChIP-Seq data Analysis using Networks

# VirtUaL ChIP-Seq data Analysis using Networks

## Documentation for package ‘vulcan’ version 1.35.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

average_fragment_length | Define the average fragment length
corr2p | Convert correlation coefficient to p-value
densityauc | densityauc - Calculate the AUC of a density object
dpareto | Probability density of Pareto distributions
fisherp | Fisher integration of p-values
gsea | GSEA
kmgformat | kmgformat - Nice Formatting of Numbers
null_gsea | Calculate Null Distribution for GSEA
p2corr | Convert p-value to correlation coefficient
p2z | p2z
pareto.fit | Estimate parameters of Pareto distribution
plot_gsea | Plot GSEA results
ppareto | Cumulative distribution function of the Pareto distributions ' Gives NA on values < threshold
rea | REA: Rank EnrichmeNt Analysis
slice | Slice
stouffer | Stouffer integration of Z scores
textplot2 | textplot2 - An x y plot of non-overlapping text
val2col | Convert a numeric vector into colors
vulcan | VULCAN - VirtUaL Chipseq data Analysis using Networks
vulcan.annotate | Function to annotate peaks for VULCAN analysis
vulcan.import | Function to import BAM files
vulcan.normalize | Function to normalize promoter peak data
vulcan.pathways | Function to calculate pathway enrichment over a ChIP-Seq profile
wstouffer | Weighted Stouffer integration of Z scores
z2p | z2p