# Generated by roxygen2: do not edit by hand

export(computeDevianceResiduals)
export(computeObservationalWeights)
export(getAlpha_mu)
export(getAlpha_pi)
export(getBeta_mu)
export(getBeta_pi)
export(getEpsilon_W)
export(getEpsilon_alpha)
export(getEpsilon_beta_mu)
export(getEpsilon_beta_pi)
export(getEpsilon_gamma_mu)
export(getEpsilon_gamma_pi)
export(getEpsilon_zeta)
export(getGamma_mu)
export(getGamma_pi)
export(getLogMu)
export(getLogitPi)
export(getMu)
export(getPhi)
export(getPi)
export(getTheta)
export(getV_mu)
export(getV_pi)
export(getW)
export(getX_mu)
export(getX_pi)
export(getZeta)
export(glmWeightedF)
export(imputeZeros)
export(loglik)
export(nFactors)
export(nFeatures)
export(nParams)
export(nSamples)
export(orthogonalizeTraceNorm)
export(penalty)
export(solveRidgeRegression)
export(zinb.loglik)
export(zinb.loglik.dispersion)
export(zinb.loglik.dispersion.gradient)
export(zinb.loglik.regression)
export(zinb.loglik.regression.gradient)
export(zinbAIC)
export(zinbBIC)
export(zinbFit)
export(zinbInitialize)
export(zinbModel)
export(zinbOptimize)
export(zinbOptimizeDispersion)
export(zinbSim)
export(zinbsurf)
export(zinbwave)
exportClasses(ZinbModel)
exportMethods(getAlpha_mu)
exportMethods(getAlpha_pi)
exportMethods(getBeta_mu)
exportMethods(getBeta_pi)
exportMethods(getEpsilon_W)
exportMethods(getEpsilon_alpha)
exportMethods(getEpsilon_beta_mu)
exportMethods(getEpsilon_beta_pi)
exportMethods(getEpsilon_gamma_mu)
exportMethods(getEpsilon_gamma_pi)
exportMethods(getEpsilon_zeta)
exportMethods(getGamma_mu)
exportMethods(getGamma_pi)
exportMethods(getLogMu)
exportMethods(getLogitPi)
exportMethods(getMu)
exportMethods(getPhi)
exportMethods(getPi)
exportMethods(getTheta)
exportMethods(getV_mu)
exportMethods(getV_pi)
exportMethods(getW)
exportMethods(getX_mu)
exportMethods(getX_pi)
exportMethods(getZeta)
exportMethods(loglik)
exportMethods(nFactors)
exportMethods(nFeatures)
exportMethods(nParams)
exportMethods(nSamples)
exportMethods(penalty)
exportMethods(show)
exportMethods(zinbAIC)
exportMethods(zinbBIC)
exportMethods(zinbFit)
exportMethods(zinbSim)
exportMethods(zinbsurf)
exportMethods(zinbwave)
import(BiocParallel)
import(SingleCellExperiment)
import(SummarizedExperiment)
import(methods)
importClassesFrom(Matrix,dgCMatrix)
importFrom(Matrix,t)
importFrom(edgeR,aveLogCPM)
importFrom(edgeR,glmFit)
importFrom(genefilter,filtered_p)
importFrom(softImpute,softImpute)
importFrom(stats,as.formula)
importFrom(stats,binomial)
importFrom(stats,dnbinom)
importFrom(stats,lowess)
importFrom(stats,model.matrix)
importFrom(stats,optim)
importFrom(stats,optimize)
importFrom(stats,pf)
importFrom(stats,quantile)
importFrom(stats,rbinom)
importFrom(stats,rnbinom)
importFrom(stats,runif)
importFrom(stats,var)
