CMEnt-package	CMEnt-package
annotateDMRsWithGenes	annotateDMRsWithGenes
augmentBSSeq	augmentBSSeq
BetaHandler	BetaHandler
buildDMRs	buildDMRs
CMEnt	CMEnt-package
combinePvalues	combinePvalues
computeDMRsInteraction	computeDMRsInteraction
convertBetaToTabix	convertBetaToTabix
extractDMRMotifs	extractDMRMotifs
findDMPsArray	findDMPsArray
findDMPsBSSeq	findDMPsBSSeq
getBetaHandler	getBetaHandler
getDMRSequences	getDMRSequences
getSortedGenomicLocs	getSortedGenomicLocs
launchCMEntViewer	launchCMEntViewer
loadExampleInputData	loadExampleInputData
loadExampleInputDataChr21And22	loadExampleInputData
loadExampleInputDataChr5And11	loadExampleInputData
orderByLoc	orderByLoc
plotAutoDMRsCircos	plotAutoDMRsCircos
plotDMR	plotDMR
plotDMRBlockFormation	plotDMRBlockFormation
plotDMRs	plotDMRs
plotDMRsCircos	plotDMRsCircos
plotDMRsManhattan	plotDMRsManhattan
readCustomMethylationBedData	readCustomMethylationBedData
reduceBSseqAroundSeeds	reduceBSseqAroundSeeds
scoreDMRs	scoreDMRs
simulateDMRs	simulateDMRs
sortBetaFileByCoordinates	sortBetaFileByCoordinates
sparsifySeeds	sparsifySeeds
