EMMA: Enrichment Methods Matter for enabling fully reproducible
and provenance-aware pathway analysis
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Documentation for package ‘EMMA’ version 0.99.4
Help Pages
| EMMA-package | EMMA |
| de_res_IFNg_vs_naive | A sample 'data.frame' containing Differential Expression Analysis, generated with 'DESeq2' |
| EMMA | EMMA |
| EMMA-pkg | EMMA |
| EMMA_add_custom_metadata | EMMA_add_custom_metadata |
| EMMA_explain | EMMA_explain |
| EMMA_freeze | EMMA_freeze |
| EMMA_get_record | EMMA_get_record |
| EMMA_run | EMMA_run |
| EMMA_show | EMMA_show |
| fea_res | A sample 'list' containing Functional Enrichment Analysis results, generated with 'gprofiler2' |
| gene_universe | A sample character vector containing the background gene list used to perform FEA on the 'macrophage' dataset |