Whole-genome variant annotation data manipulation using GDS
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Documentation for package ‘GDSAnnotator’ version 0.99.2
Help Pages
| GDSAnnotator-package | Whole-genome variant annotation data manipulation using GDS files |
| GDSAnnotator | Whole-genome variant annotation data manipulation using GDS files |
| GDSAnnotator-extdata | Example data files |
| print.SeqAnnotStat | Summary statistics of variant annotation |
| seqAnnotate | Annotate a list of variants |
| seqAnnotate-method | Annotate a list of variants |
| seqAnnotateGDS | Annotate a list of variants |
| seqAnnotateVCF | Annotate a list of variants |
| seqAnnotGeneTable | Per-gene annotation counts |
| seqAnnotList | List annotations |
| seqAnnotReport | Variant annotation summary report |
| seqAnnotStat | Summary statistics of variant annotation |
| seqANNOVAR2GDS | Reformat ANNOVAR VCF |
| seqFAVOR2GDS | Reformat FAVOR files |
| seqFAVORTar2GDS | Reformat FAVOR files |
| seqGnomAD2GDS | Reformat gnomAD VCF |
| seqSnpEff2GDS | Reformat SnpEff VCF |
| seqValueCounts | Counts of unique values |
| seqVEP2GDS | Reformat Ensembl-VEP VCF |