# Generated by roxygen2: do not edit by hand

export(gexp_align_rnaseq_sample_names)
export(gexp_batch_correct)
export(gexp_download_finalize_common_genes)
export(gexp_download_normalize_ids_for_overlap)
export(gexp_download_one_microarray_gse)
export(gexp_download_one_rnaseq_gse)
export(gexp_fetch_geo_series_matrix_metadata)
export(gexp_no_common_genes_diagnostic_log)
export(gexp_normalize_and_intersect)
export(gexp_parse_gse_inputs)
export(gexp_prepare_download_dirs)
export(gexp_qc_build_sample_dataset_map)
export(gexp_qc_detect_outliers)
export(gexp_qc_exclude_samples)
export(gexp_qc_gene_overlap_summary)
export(gexp_qc_prepare_boxplot_data)
export(gexp_qc_prepare_density_data)
export(gexp_qc_prepare_upset_data)
export(gexp_qc_prepare_venn_sets)
export(gexp_rebuild_all_genes_list)
export(gexp_run_de)
export(gexp_wgcna_prepare)
export(gexpipe_analysis_report_text)
export(gexpipe_batch_confounding_summary)
export(gexpipe_batch_covariate_info)
export(gexpipe_build_batch_mod)
export(gexpipe_build_de_design)
export(gexpipe_de_sample_info)
export(gexpipe_deseq2_design)
export(gexpipe_has_mixed_platforms)
export(gexpipe_independent_filter)
export(gexpipe_pca_polar_df)
export(gexpipe_platform_dataset_confounded)
export(gexpipe_pvca_df)
export(gexpipe_setup)
export(gexpipe_wgcna_heatmap_cor)
export(runGExPipe)
importFrom(AnnotationDbi,keys)
importFrom(DT,datatable)
importFrom(DT,formatRound)
importFrom(DT,renderDT)
importFrom(VennDiagram,venn.diagram)
importFrom(dplyr,`%>%`)
importFrom(edgeR,filterByExpr)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_polar)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_fill_identity)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_log10)
importFrom(ggplot2,theme)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,colors)
importFrom(grDevices,dev.off)
importFrom(grDevices,jpeg)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,legend)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(grid,grid.draw)
importFrom(limma,is.fullrank)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(shiny,reactiveVal)
importFrom(shiny,reactiveValues)
importFrom(shiny,selectizeInput)
importFrom(shiny,updateActionButton)
importFrom(shiny,updateCheckboxGroupInput)
importFrom(shiny,updateNumericInput)
importFrom(shinydashboard,updateTabItems)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,binomial)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,dendrapply)
importFrom(stats,density)
importFrom(stats,dist)
importFrom(stats,glm)
importFrom(stats,hclust)
importFrom(stats,is.leaf)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,p.adjust)
importFrom(stats,plogis)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(stats,vcov)
importFrom(utils,capture.output)
importFrom(utils,download.file)
importFrom(utils,head)
importFrom(utils,read.delim)
importFrom(utils,tail)
importFrom(utils,untar)
importFrom(utils,zip)
