RflomicsMAE-class       RflomicsMAE Class
RflomicsSE-class        RflomicsSE Class
createRflomicsMAE       RflomicsMAE class constructor
ecoseed.df              Ecoseed project data
ecoseed.mae             Ecoseed project data
generateExpressionContrast
                        Contrast expressions
generateModelFormulae   Statistical model formulae
generateReport          Generate RFLOMICS html report or archive
getAnalysis             Get results from RFLOMICS object
prepareForIntegration,RflomicsMAE-method
                        Preparation step for integration
rflomicsMAE2MAE         convert a RflomicsMAE to a MultiAssayExperiment
runAnnotationEnrichment
                        Run Gene Enrichment Analysis and process
                        results
runCoExpression         Run CoExpression Analysis and process results
runDataProcessing       Omic Data Exploratory and Preprocessing
runDiffAnalysis         Run Differential Expression Analysis and
                        process results
runOmicsIntegration,RflomicsMAE-method
                        runOmicsIntegration
runRFLOMICS             Run RFLOMICS interface
