Package: escape
Title: Easy single-cell analysis platform for enrichment
Version: 2.9.1
Authors@R: c(
    person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "ncborch@gmail.com"),
    person(given = "Jared", family = "Andrews", role = c("aut"), email = "jared.andrews07@gmail.com"),
    person(given = "Tobias", family = "Hoch", role = c("ctb"), email = "tobias@hoch.earth"),
    person(given = "Alexei", family = "Martsinkovskiy", role = c("ctb"), email = "alexei.martsinkovskiy@gmail.com"),
    person(given = "Cathal", family = "King", role = c("ctb"))
    )
Description: A bridging R package to facilitate gene set enrichment
        analysis (GSEA) in the context of single-cell RNA sequencing.
        Using raw count information, Seurat objects,
        SingleCellExperiment or SpatialExperiment format, users can
        perform and visualize ssGSEA, GSVA, AUCell, and UCell-based
        enrichment calculations across individual cells. An optional
        plaid backend provides fast reimplementations of these methods
        plus PLAID, singscore, and scSE scoring. Alternatively, escape
        supports use of rank-based GSEA, such as the use of
        differential gene expression via fgsea.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
biocViews: Software, SingleCell, Classification, Annotation,
        GeneSetEnrichment, Sequencing, GeneSignaling, Pathways
Depends: R (>= 4.1)
Imports: ggdist, ggplot2 (>= 3.5.0), grDevices, Matrix, MatrixGenerics,
        methods, stats, SummarizedExperiment, utils
Suggests: AUCell, BiocParallel, BiocStyle, DelayedMatrixStats, dplyr,
        fgsea, GSEABase, ggraph, ggridges, ggpointdensity, GSVA,
        hexbin, igraph, irlba, knitr, msigdb, patchwork, plaid,
        rmarkdown, rlang, S4Vectors, scran, SeuratObject, Seurat,
        SingleCellExperiment, SpatialExperiment, spelling, stringr,
        testthat (>= 3.0.0), UCell
VignetteBuilder: knitr
Language: en-US
BugReports: https://github.com/BorchLab/escape/issues
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-08-09 10:49:11 UTC
RemoteUrl: https://github.com/bioc/escape
RemoteRef: HEAD
RemoteSha: da5564071eefbf53f04e901710cf4c29bb62e4e2
NeedsCompilation: no
Packaged: 2026-10-27 14:54:23 UTC; root
Author: Nick Borcherding [aut, cre],
  Jared Andrews [aut],
  Tobias Hoch [ctb],
  Alexei Martsinkovskiy [ctb],
  Cathal King [ctb]
Maintainer: Nick Borcherding <ncborch@gmail.com>
Built: R 4.6.1; ; 2026-10-27 15:06:52 UTC; unix
