CNVnormal               Normalize copy number variation (CNV).
MnM.qvalue              Estimate the q-values for a given set of
                        p-values
MnM.selectDMR           Select significants of each comparation.
MnM.test                Compute p-value of each bin.
calcFactornew           Normalization factor.
calculatecount          Call C programs to R.
calculatecount1         Call C programs to R.
calculatecountneg       Call C programs to R.
countMREbin             Compute the total MRE-seq number of each bin.
countMREcpgbin          Compute the MRE CpG number of each bin with MRE
                        CpG sites.
countMeDIPbin           Compute the total MeDIP-seq number of each bin.
countcpgbin             Compute the total CpG number of each bin with
                        each CpG site.
cpgcount                Call C programs to R.
methylMnM-package       MeDIP-Seq and MRE-Seq data analysis
normpdf                 Compute p-value with normal distribution.
normpdft1               Compute p-value with normal distribution.
pmultinom               Call C programs to R.
qvalue.rank             Rank values.
removeblacklist         Remove blacklist.
