# Generated by roxygen2: do not edit by hand

export(colourTree)
export(getCellGMeans)
export(getCellProp)
export(getClusterTree)
export(getTreeResults)
export(hopachToPhylo)
export(plotInteractiveHeatmap)
export(runHOPACH)
export(testTree)
import(SingleCellExperiment)
import(data.table)
import(ggiraph)
import(ggplot2)
import(hopach)
importFrom(ape,as.phylo)
importFrom(ape,read.tree)
importFrom(diffcyt,createFormula)
importFrom(dplyr,"%>%")
importFrom(dplyr,bind_cols)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarise_all)
importFrom(dplyr,tally)
importFrom(edgeR,DGEList)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,glmFit)
importFrom(edgeR,glmLRT)
importFrom(edgeR,topTags)
importFrom(ggtree,geom_tiplab)
importFrom(ggtree,ggtree)
importFrom(lme4,glmer)
importFrom(multcomp,glht)
importFrom(patchwork,plot_layout)
importFrom(stats,as.formula)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,t.test)
importFrom(stats,wilcox.test)
importFrom(tidyr,complete)
importFrom(tidyr,gather)
importFrom(tidyr,pivot_wider)
importFrom(utils,modifyList)
