Representation of multiple sequence alignments in Bioconductor
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Documentation for package ‘MultipleAlignment’ version 0.99.4
Help Pages
| AAMultipleAlignment | MultipleAlignment objects |
| AAMultipleAlignment-class | MultipleAlignment objects |
| alphabetFrequency-method | MultipleAlignment utilities |
| as.character-method | MultipleAlignment objects |
| as.matrix-method | MultipleAlignment objects |
| class:AAMultipleAlignment | MultipleAlignment objects |
| class:DNAMultipleAlignment | MultipleAlignment objects |
| class:MultipleAlignment | MultipleAlignment objects |
| class:RNAMultipleAlignment | MultipleAlignment objects |
| coerce-method | MultipleAlignment objects |
| colmask | MultipleAlignment objects |
| colmask-method | MultipleAlignment objects |
| colmask<- | MultipleAlignment objects |
| colmask<--method | MultipleAlignment objects |
| consensusMatrix-method | MultipleAlignment utilities |
| consensusString-method | MultipleAlignment utilities |
| consensusViews | MultipleAlignment utilities |
| consensusViews-method | MultipleAlignment utilities |
| detail | Show (display) detailed object content |
| detail-method | MultipleAlignment objects |
| dim-method | MultipleAlignment objects |
| DNAMultipleAlignment | MultipleAlignment objects |
| DNAMultipleAlignment-class | MultipleAlignment objects |
| maskeddim | MultipleAlignment objects |
| maskeddim-method | MultipleAlignment objects |
| maskedncol | MultipleAlignment objects |
| maskedncol-method | MultipleAlignment objects |
| maskednrow | MultipleAlignment objects |
| maskednrow-method | MultipleAlignment objects |
| maskedratio-method | MultipleAlignment objects |
| maskGaps | MultipleAlignment objects |
| maskGaps-method | MultipleAlignment objects |
| maskMotif-method | MultipleAlignment objects |
| MultipleAlignment | MultipleAlignment objects |
| MultipleAlignment-class | MultipleAlignment objects |
| MultipleAlignment-IO | Read/write MultipleAlignment objects |
| MultipleAlignment-utils | MultipleAlignment utilities |
| MultipleAlignment_IO | Read/write MultipleAlignment objects |
| MultipleAlignment_utils | MultipleAlignment utilities |
| nchar-method | MultipleAlignment objects |
| ncol-method | MultipleAlignment objects |
| nrow-method | MultipleAlignment objects |
| readAAMultipleAlignment | Read/write MultipleAlignment objects |
| readDNAMultipleAlignment | Read/write MultipleAlignment objects |
| readRNAMultipleAlignment | Read/write MultipleAlignment objects |
| RNAMultipleAlignment | MultipleAlignment objects |
| RNAMultipleAlignment-class | MultipleAlignment objects |
| rowmask | MultipleAlignment objects |
| rowmask-method | MultipleAlignment objects |
| rowmask<- | MultipleAlignment objects |
| rowmask<--method | MultipleAlignment objects |
| rownames-method | MultipleAlignment objects |
| rownames<--method | MultipleAlignment objects |
| seqtype-method | MultipleAlignment objects |
| show-method | MultipleAlignment objects |
| unmasked-method | MultipleAlignment objects |
| updateObject-method | MultipleAlignment objects |
| write.phylip | Read/write MultipleAlignment objects |