Compare Short Tandem Repeat Profiles for Model Authentication

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Documentation for package ‘STRprofilerR’ version 0.99.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

$-method	Dimensions, subsetting, and coercion for STRProfiles
alleles	Accessors for STRProfiles objects
alleles-method	Accessors for STRProfiles objects
alleles<-	Accessors for STRProfiles objects
alleles<--method	Accessors for STRProfiles objects
amelogeninMarkers	Recognised amelogenin marker names
as.data.frame-method	Dimensions, subsetting, and coercion for STRProfiles
c-method	Dimensions, subsetting, and coercion for STRProfiles
classifyMarkers	Classify STR markers
clastrBatchQuery	Query CLASTR in batch and save the XLSX result
clastrMarkers	Marker names accepted by the CLASTR API
clastrQuery	Query the Cellosaurus knowledge base via CLASTR
cleanAlleles	Clean and split a vector of allele calls
compareProfiles	Compare STR profiles end to end
dim-method	Dimensions, subsetting, and coercion for STRProfiles
dimnames-method	Dimensions, subsetting, and coercion for STRProfiles
flagMixedSamples	Flag potentially mixed samples
harmonizeMarkers	Marker name harmonisation
markerAliases	Marker name harmonisation
markerData	Accessors for STRProfiles objects
markerData-method	Accessors for STRProfiles objects
markerData<-	Accessors for STRProfiles objects
markerData<--method	Accessors for STRProfiles objects
markers	Accessors for STRProfiles objects
markers-method	Accessors for STRProfiles objects
params	Accessors for STRComparison objects
params-method	Accessors for STRComparison objects
pdxSTRProfiles	STR profiles of patient-derived models from JAX and the NCI PDMR
provenance	Accessors for STRProfiles objects
provenance-method	Accessors for STRProfiles objects
queryProfiles	Accessors for STRComparison objects
queryProfiles-method	Accessors for STRComparison objects
readSTRProfiles	Read STR profiles from file
referenceProfiles	Accessors for STRComparison objects
referenceProfiles-method	Accessors for STRComparison objects
sampleData	Accessors for STRProfiles objects
sampleData-method	Accessors for STRProfiles objects
sampleData<-	Accessors for STRProfiles objects
sampleData<--method	Accessors for STRProfiles objects
scoreProfiles	Score STR profiles against each other
scoreQuery	Score a single profile against a reference set
scores	Accessors for STRComparison objects
scores-method	Accessors for STRComparison objects
show-method	Accessors for STRComparison objects
show-method	Dimensions, subsetting, and coercion for STRProfiles
STRComparison	STRComparison: the result of comparing STR profiles
STRComparison-accessors	Accessors for STRComparison objects
STRComparison-class	STRComparison: the result of comparing STR profiles
strHTMLTable	Write a data frame as a standalone HTML table
STRprofilerApp	Launch the STRprofiler Shiny application
STRProfiles	Build STRProfiles from a data.frame
STRProfiles-accessors	Accessors for STRProfiles objects
STRProfiles-class	STRProfiles: a set of short tandem repeat profiles
STRProfiles-methods	Dimensions, subsetting, and coercion for STRProfiles
summarizeMatches	Summarise pairwise scores into one row per query
summary-method	Accessors for STRComparison objects
validateClastrMarkers	Marker names accepted by the CLASTR API
writeSTRProfiles	Write STR profiles to file
writeSTRResults	Write comparison results to disk
[-method	Dimensions, subsetting, and coercion for STRProfiles