Bayesian Modeling of Barcoded Tumor Mixtures for Quantitative Treatment Resistance Analysis

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Documentation for package ‘barmixR’ version 0.99.2

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

barmixRQTR	Fit the barmixR model for quantitative treatment resistance (QTR)
barmixR_fit	Class barmixR_fit
fractionRatio	Compute ratios of relative barcode abundance between treatments
populationRatio	Compute ratios of population size between treatments
ppcBarcodes	Posterior predictive checks for barcode composition
ppcPopulation	Posterior predictive checks for population size
QTRDecision	Rank treatments within each cell line using QTR boxplot summaries
QTRheatmap	Visualize quantitative treatment resistance (QTR) using bubble heatmaps
QTRresistance	Estimate quantitative treatment resistance (QTR)