Package: biomaRt
Title: Interface to BioMart databases (i.e. Ensembl)
Version: 2.67.0
Authors@R: c(
    person("Steffen", "Durinck", , "biomartdev@gmail.com", role = "aut"),
    person("Wolfgang", "Huber", role = "aut"),
    person("Sean", "Davis", , "sdavis2@mail.nih.gov", role = "ctb"),
    person("Francois", "Pepin", role = "ctb"),
    person("Vince S", "Buffalo", role = "ctb"),
    person("Mike", "Smith", , "grimbough@gmail.com", role = "ctb",
           comment = c(ORCID = "0000-0002-7800-3848")),
    person("Hugo", "Gruson", , "hugo.gruson@embl.de", role = c("ctb", "cre"),
           comment = c(ORCID = "0000-0002-4094-1476")),
    person("German Network for Bioinformatics Infrastructure - de.NBI", role = "fnd")
  )
Description: In recent years a wealth of biological data has become
        available in public data repositories. Easy access to these
        valuable data resources and firm integration with data analysis
        is needed for comprehensive bioinformatics data analysis.
        biomaRt provides an interface to a growing collection of
        databases implementing the BioMart software suite
        (<https://www.ensembl.org/info/data/biomart/index.html>). The
        package enables retrieval of large amounts of data in a uniform
        way without the need to know the underlying database schemas or
        write complex SQL queries.  The most prominent examples of
        BioMart databases are maintained by Ensembl, which provides
        biomaRt users direct access to a diverse set of data and
        enables a wide range of powerful online queries from gene
        annotation to database mining.
License: Artistic-2.0
URL: https://github.com/Huber-group-EMBL/biomaRt,
        https://huber-group-embl.github.io/biomaRt/
BugReports: https://github.com/Huber-group-EMBL/biomaRt/issues
Depends: methods, R (>= 4.4.0)
Imports: AnnotationDbi, BiocFileCache, curl, httr2, progress, stringr,
        utils, xml2
Suggests: BiocStyle, httptest2, knitr, mockery, rmarkdown, testthat (>=
        3.0.0)
VignetteBuilder: knitr
biocViews: Annotation
Config/Needs/website: xfun
Config/testthat/edition: 3
Encoding: UTF-8
LazyLoad: yes
NeedsCompilation: no
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Collate: 'biomaRt-package.R' 'biomaRtClasses.R' 'methods-Mart.R'
        'biomaRt.R' 'caching.R' 'ensembl.R' 'ensembl_wrappers.R'
        'ensembl_ssl_settings.R' 'utilityFunctions.R'
        'non-biomart-utils.R' 'exportFASTA.R' 'NP2009code.R'
Config/pak/sysreqs: libicu-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 13:56:01 UTC
RemoteUrl: https://github.com/bioc/biomaRt
RemoteRef: HEAD
RemoteSha: 1c6179c5b1b24e5db90893c6d17bc9bbb4fd2036
Packaged: 2025-11-02 14:42:36 UTC; root
Author: Steffen Durinck [aut],
  Wolfgang Huber [aut],
  Sean Davis [ctb],
  Francois Pepin [ctb],
  Vince S Buffalo [ctb],
  Mike Smith [ctb] (ORCID: <https://orcid.org/0000-0002-7800-3848>),
  Hugo Gruson [ctb, cre] (ORCID: <https://orcid.org/0000-0002-4094-1476>),
  German Network for Bioinformatics Infrastructure - de.NBI [fnd]
Maintainer: Hugo Gruson <hugo.gruson@embl.de>
Built: R 4.6.0; ; 2025-11-02 14:44:45 UTC; windows
