PREDICATES              Standard predicate CURIEs used in OBO
                        ontologies
SemsqlConn              SemsqlConn: S7 connection wrapper for
                        SemanticSQL databases
bbop_sqlite_db_gz       retrieve and cache all filenames of Semantic
                        SQL ontologies available, checking for updated
                        content relative to cache via ETag
cells_with_pmp          produce a table with cells exhibiting given
                        proteins on plasma membrane according to CL
cn2tag                  a named vector with mapping from cell type
                        phrase to CURIE for CL.owl of 2025-12-17
count_by_prefix         Count labeled terms grouped by CURIE prefix
count_descendants       Count the number of descendants of a term
describe_table          Describe the columns of a table in a SemsqlConn
                        database
disconnect              Disconnect a SemsqlConn from its database
find_by_restriction     Find terms that have a given OWL someValuesFrom
                        restriction
find_intersection       Find terms that are descendants of a superclass
                        and have a given restriction
get_ancestors           Get all ancestors of a term via entailed edges
get_ancestors_partonomy
                        Get ancestors traversing both is-a and part-of
                        relationships
get_definition          Get the text definition for a term
get_descendants         Get all descendants of a term via entailed
                        edges
get_descendants_partonomy
                        Get descendants traversing both is-a and
                        has-part relationships
get_direct_edges        Get direct edges in the ontology graph for a
                        term
get_direct_subclasses   Get direct subclasses of a term
get_direct_superclasses
                        Get direct superclasses of a term
get_label               Get the rdfs:label for a term
get_prefix              Retrieve the ontology prefix from a SemsqlConn
get_present_pmp         produce a table with list of proteins from
                        protein ontology identified as present on cell
                        membranes for input cell type CURIEs
get_restrictions        Get OWL someValuesFrom restrictions for a term
get_synonyms            Get synonyms for a term
get_term_info           Retrieve a summary of information about a term
improve_nodes           inject linefeeds for node names for graph, with
                        textual annotation from ontology
is_connected            Test whether a SemsqlConn has a valid open
                        connection
list_tables             List tables in a SemsqlConn database
make_graphNEL_from_ontology_plot
                        obtain graphNEL from ontology_plot instance of
                        ontologyPlot
ncit_map                a named vector with values rdfs labels in NCI
                        thesaurus, and names the corresponding formal
                        ontology tags
onto_plot2              high-level use of graph/Rgraphviz for rendering
                        ontology relations
print                   Show method for SemsqlConn. Concise one-line
                        summary displayed when a 'SemsqlConn' object is
                        auto-printed at the R prompt.
reconnect               Reconnect a SemsqlConn to its database
report                  Display a detailed report of a SemsqlConn
                        object
retrieve_semsql_conn    return a SQLite connection (read only) to an
                        INCAtools Semantic SQL ontology
run_query               Run an arbitrary SQL query against a SemsqlConn
                        database
search_labels           Search term labels in a SemsqlConn database
semsql_connect          Create a SemsqlConn connection
semsql_to_oi            produce an ontology_index instance from
                        semantic sql sqlite connection
semsql_url              produce INCAtools distribution URL
tag2cn                  a named vector with mapping from CURIE to cell
                        type phrase for CL.owl of 2025-12-17
with_connection         Execute code with an automatically managed
                        SemsqlConn
