Compositional and Transcriptional Decomposition of Pseudo-Bulk Differential Expression

Documentation for package ‘scCompoundDE’ version 0.99.1

scCompoundDE-package	scCompoundDE: Compositional and Transcriptional Decomposition of Pseudo-Bulk Differential Expression
CDEResult	Constructor for CDEResult
CDEResult-class	CDEResult: Compound DE Result Container
compoundDE	Compound Differential Expression: Transcriptional and Compositional Decomposition
deTable	Accessor for the DE table in a CDEResult
deTable-method	Accessor for the DE table in a CDEResult
filterGenesBySource	Filter DE Genes by Source Classification
plotDecomposition	Scatter Plot of Transcriptional vs Compositional DE Scores
plotProportion	Stacked Bar Plot of Subtype Proportions per Condition
plotTCRatio	Histogram of TC_ratio Distribution
scCompoundDE	scCompoundDE: Compositional and Transcriptional Decomposition of Pseudo-Bulk Differential Expression
show-method	Show method for CDEResult
subtypeDE	Accessor for per-subtype DE results in a CDEResult
subtypeDE-method	Accessor for per-subtype DE results in a CDEResult
subtypeProportions	Accessor for subtype proportions in a CDEResult
subtypeProportions-method	Accessor for subtype proportions in a CDEResult
tcRatio	Accessor for TC_ratio vector in a CDEResult
tcRatio-method	Accessor for TC_ratio vector in a CDEResult