fd54a5b1a493e8c47a2c9f68e555797c *DESCRIPTION
6756bdd16eb44d48b25923854dabb8f6 *LICENSE
a059ee0ec9949d3e59059ec42fd89ba5 *NAMESPACE
df31467f3b80fbdbc8943eb87cb472ff *R/annotation_utils.R
590318f22003fe754a14e9a8d53e6b28 *R/attach_clonotypes.R
d9b650d813b9f89ad1c9a9b5c3a069ee *R/beta_summary.R
f4fec70b8a564266d074bee2a76e5054 *R/blast_utils.R
3af71b3627e0fa2f3aebfdee62155a3e *R/clustirr.R
5cf1d9427e0142236ee887715c492e97 *R/community.R
3a44b5abcf34edacd636961fd18acd63 *R/community_cosine_sim.R
93f731ac92b787d9145108a6b31b0d51 *R/community_decoder.R
3f2545830d1fe857853a734381525ead *R/community_honeycomb.R
07683d7c0287c29534126ea3697f4d49 *R/community_motif.R
d94220172ffc1fcc1501d92bab9eb172 *R/community_purity.R
27c8e389512fb15ba37e75f4dd63d57e *R/dco.R
01c67077c3879760a3638b70f7498463 *R/general_utils.R
33f1c4e3649eed91363fa00896b4006d *R/graph.R
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b8dcd8edbcd0b41a48a876740729d348 *R/input_check.R
287083b6e3638028d5819e9da2e557fb *R/merge.R
457739c069d3d4847caaff62716c2b72 *R/node_ag.R
946a892bc7c72874074c8a8d30ac6826 *R/nrads.R
b3cfb5205602bd5432a21f63f1ce7d65 *R/stanmodels.R
9bd9f5d707a7ce725bdcd18b66a1b521 *README.md
018b206e99b68fbdf32a1aa0f5cb06a1 *build/vignette.rds
7e297a31e37e77c201a2bacff2f979eb *configure
5fdedca26c8830d7bb06aa1c4a634204 *configure.win
938f1640bbcee65ce83726127c8efa8f *data/BLOSUM62.rda
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7bbd35a1f3b03d014aa2bb940347e937 *data/datalist
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02920aa0aac515d45ffc27b1f1491098 *data/tcr3d.RData
0a56a42c15368d7016ff9d1a9d2f0f83 *data/vdjdb.RData
bee4fe6c0288e5bc933c9fcf834e425e *inst/CITATION
38d78ae909077c66e044449f91972baa *inst/NEWS
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42d3f1473d43eb1cac22d84621f6e0b0 *inst/stan/dmh.stan
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dfd24ad3ce1442c12eb66f11dca575cf *man/BLOSUM62.Rd
281b5b66dbea1d724c5e203e6d09f6c0 *man/D1.Rd
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0fe21e5a2b6ed3d36aaefdc00415eae9 *man/D_CMV_FLU.Rd
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6d496f47ecd2bca5ecbf496fc20b9dea *man/clust_irr-class.Rd
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f8903265c4dbd3be657d93f502749299 *man/decode_all_communities.Rd
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dc61a7e1ea276382cae40a7724566123 *man/vdjdb.Rd
564c40d0e86bb1e58d039ff240e97b9f *src/Makevars
4cc2e81e42a31bc19686f08bf823af33 *src/RcppExports.cpp
ac59cb0b9762a3709325bc94bbd63b9d *src/stanExports_dm.cc
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d0dfc8a9dcbcb2870cae405bdfe10b50 *src/stanExports_dmh.cc
a02600d292457e34cf488b4d5ee5b6c3 *src/stanExports_dmh.h
007da2ed32ab71344582e00b0ac6d8c3 *tests/testthat.R
04785c76b0e8ac8501a398ab9e755a41 *tests/testthat/test-attach_clonotypes_input_checks.R
9009b853a81dc7227f11863414f0f8ac *tests/testthat/test-cdr3_na.R
def6528ed69d4b5d702ebb5f0a795657 *tests/testthat/test-get_blosum.R
037eefadf45bd8b97baacb5d4f499217 *tests/testthat/test-multi-chain-clustering.R
4605b7608ee5c9a7858c723410b39735 *tests/testthat/test-s.R
eecb50cb9527e4102e1145b3ed757fc0 *tests/testthat/test-save_interactive_graph.R
d99215cfe200ff6f21d866883fafbca1 *vignettes/User_manual_case_study.Rmd
d37322bd9ab7ec06343ce18d1592fcae *vignettes/User_manual_groups.Rmd
2e0846ffb0ec8e006f2fcff24ade29fe *vignettes/User_manual_introduction.Rmd
