Package: ClusterGVis
Title: One-Step to Cluster and Visualize Gene Expression Data
Version: 0.99.9
Authors@R: 
  person(given = "Jun", 
        family = "Zhang",    
        email = "1138976957@qq.com", 
        role  = c("aut", "cre", "cph"), 
        comment = c(ORCID = "0000-0001-7692-9105"))
Description: Provides a streamlined workflow for clustering and visualizing 
  gene expression patterns, particularly from time-series RNA-Seq and 
  single-cell experiments. The package is designed to integrate seamlessly 
  within the Bioconductor ecosystem by operating directly on standard data 
  classes such as `SummarizedExperiment` and `SingleCellExperiment`. It 
  implements common clustering algorithms (e.g., k-means, fuzzy c-means) 
  and generates a suite of publication-ready visualizations to explore 
  co-expressed gene modules. Functions are also included to facilitate 
  the visualization of clustering results derived from other popular tools.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.5)
Imports: colorRamps, dplyr, e1071, factoextra, ggplot2, grDevices,
        grid, Matrix, methods, purrr, reshape2, scales, stats, tibble,
        SingleCellExperiment, SummarizedExperiment, igraph, VGAM,
        scuttle
Suggests: Biobase, ComplexHeatmap, clusterProfiler, TCseq,
        org.Mm.eg.db, circlize, knitr, monocle, pheatmap, rmarkdown,
        Seurat, WGCNA, utils, BiocManager, S4Vectors, pheatmap,
        testthat (>= 3.0.0)
biocViews:
        RNASeq,Transcriptomics,Visualization,SingleCell,GeneExpression,Clustering
URL: https://github.com/junjunlab/ClusterGVis/,
        https://junjunlab.github.io/ClusterGvis-manual/
BugReports: https://github.com/junjunlab/ClusterGVis/issues
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/ClusterGVis
git_branch: devel
git_last_commit: 15fc470
git_last_commit_date: 2025-11-12
Repository: Bioconductor 3.23
Date/Publication: 2025-11-20
NeedsCompilation: no
Packaged: 2025-11-20 21:52:49 UTC; biocbuild
Author: Jun Zhang [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-7692-9105>)
Maintainer: Jun Zhang <1138976957@qq.com>
