#chromosome	start	end	crest	length	tcnNbrOfLoci	tcnMean	tcnNbrOfSNPs	tcnNbrOfHets	dhNbrOfLoci	map	dhMax	cluster	neighbour	distDH	errorSNP	distTcn	errorLength	totalError	minStart	maxStart	minStop	maxStop	area	peaks	meanCovT	meanCovB	tcnMeanRaw	AF	BAF	dhMean	c1Mean	c2Mean	A	B	genotype	TCN	CNA.type
1	840009	12839977	NA	11999980	172271	2.9962893	170982	8750	99	mappable	0.31058269	8	edge	0.00372213672	0.000099611515	0.0227770766	0.08504657	0.08514618	840009	840009	12839977	12839977	0.87364711	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
1	13780016	120529963	NA	106750017	1393813	2.9962893	1388178	67721	34	mappable	0.31165000	8	self	0.00051498674	0.000013632336	0.0032384210	0.07499158	0.07500521	13780016	13780016	120529963	120529963	0.86946987	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
1	121220004	121229986	NA	9983	177	3.2218182	175	9	0	mappable	0.25045556	NA	NA	0.05507164466	0.090909090909	0.0616570005	0.15054281	0.24145190	121220004	121220004	121229986	121229986	NA	missing	832270.0	52.444411	0.9920000	NA	NA	NA	NA	NA	NA	NA	NA	NA	TCNneutral
1	144010127	144019970	NA	9844	155	2.9962893	79	0	3	mappable	NA	8	self	0.01943672932	0.013157894737	0.0246429995	0.15077238	0.16393028	144010127	144010127	144019970	144019970	NA	missing	814730.2	NA	0.9279789	NA	NA	NA	NA	NA	NA	NA	NA	NA	TCNneutral
1	144920087	145739956	NA	819870	6374	3.0787955	5828	7	38	mappable	0.29615226	NA	NA	0.25970497799	0.001808318264	0.0210570005	0.10180689	0.10361521	144920087	144920087	145739956	145739956	NA	missing	1394622.6	85.669672	0.9514000	NA	NA	NA	NA	NA	NA	NA	NA	NA	TCNneutral
1	146540101	147829895	NA	1289795	11681	2.9962893	11643	526	4	mappable	0.29963333	8	self	0.01048235895	0.001773049645	0.0054570005	0.09852843	0.10030148	146540101	146540101	147829895	147829895	0.92039994	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
1	149815060	245679935	NA	95864932	1296304	2.9962893	1290758	67593	68	mappable	0.31199286	8	self	0.00129571728	0.000013672970	0.0006107949	0.07543043	0.07544410	149815060	149815060	245679803	245679935	0.88210846	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
1	245679936	248819497	NA	3139565	45101	3.1768833	44741	2897	20	mappable	0.31797500	3	edge	0.00246168867	0.000307031010	0.0346570005	0.09266925	0.09297628	245679936	245680068	248798862	248819497	0.82738467	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
10	130013	26020075	NA	25890078	418002	2.9962893	415788	21361	143	mappable	0.31187500	8	edge	0.00096331133	0.000042419615	0.0046429995	0.08121532	0.08125774	130013	130013	26019978	26020075	0.85906937	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
10	26020076	38779987	NA	12759919	161541	3.1768833	160802	9087	21	mappable	0.31222289	3	NA	0.00246168867	0.000101770812	0.0433570005	0.08472740	0.08482917	26020076	26020173	38779954	38779987	0.87249842	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
10	39080035	39149984	NA	69950	5043	3.4173295	4754	0	20	mappable	NA	NA	NA	0.05986456551	0.003460207612	0.1171570005	0.12426963	0.12772984	39080035	39080054	39149984	39149984	NA	missing	857363.4	NA	1.0475000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
10	42410000	46159967	NA	3749971	43646	3.1768833	43373	2308	0	mappable	0.31878070	3	NA	0.00588668867	0.000387446726	0.0958570005	0.09158160	0.09196905	42410000	42410000	46159967	46159967	0.87811129	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
10	48310177	48659961	NA	349785	5572	2.7075000	5553	282	1	mappable	0.32160721	NA	NA	0.00595335534	0.003322259136	0.0843429995	0.10860057	0.11192283	48310177	48310177	48659961	48659961	0.87086166	2	812625.6	53.417013	0.8460000	30.98549	0.6731873	0.34637462	0.8848454	1.8226546	2	1	2:1	3	TCNneutral
10	49390096	135439925	NA	86049871	1212541	2.9962893	1207043	66655	180	mappable	0.31384545	8	edge	0.00065836898	0.000013859630	0.0032893988	0.07587636	0.07589022	49390096	49390096	135439925	135439925	0.87403740	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
11	190010	48899996	NA	48710006	695407	1.9685393	692049	37142	144	mappable	0.07187500	NA	edge	0.23949724942	0.000024692577	0.2941125067	0.07831554	0.07834024	190010	190010	48899996	48899996	0.15729458	1	565197.4	29.306534	0.6362305	NA	NA	0.00000000	0.9842696	0.9842696	1	1	1:1	2	DEL
11	48899997	50170092	NA	1270096	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	Inf	0.9303429995	0.09863632	Inf	48899997	48899997	50170092	50170092	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	NA	0	HomoDel
11	50170093	50640016	NA	469924	9074	2.6705114	9070	54	0	mappable	0.04852787	NA	NA	0.26568216379	0.017241379310	0.0948429995	0.10614546	0.12338684	50170093	50170093	50639971	50640016	0.17603763	1	555747.1	28.857681	0.8355000	NA	NA	0.00000000	1.3352557	1.3352557	sub	sub	sub:sub	sub	NA
11	51230026	51579984	NA	349959	4674	2.8466477	4657	46	0	mappable	0.09101987	NA	NA	0.22358318312	0.015873015873	0.0448429995	0.10859634	0.12446936	51230026	51230058	51579984	51579984	0.23900694	1	601012.7	32.056239	0.8855000	NA	NA	0.00000000	1.4233239	1.4233239	sub	sub	sub:sub	sub	TCNneutral
11	54792817	89349940	NA	34557139	455904	2.0151249	453790	19886	46	mappable	0.07530000	NA	NA	0.23728831133	0.000045454545	0.2808881531	0.07986429	0.07990975	54792817	54792817	89349940	89349940	0.16856092	1	568456.6	29.475528	0.6494548	NA	NA	0.00000000	1.0075624	1.0075624	1	1	1:1	2	DEL
11	89850037	134939862	NA	45089842	665022	2.0002304	662136	34689	62	mappable	0.07328158	NA	edge	0.23728831133	0.000026614856	0.2851162559	0.07865871	0.07868533	89850037	89850037	134939862	134939862	0.14250996	1	563395.9	29.141168	0.6452267	NA	NA	0.00000000	1.0001152	1.0001152	1	1	1:1	2	DEL
12	160107	34819969	NA	34659880	478964	2.9962893	476359	26557	29	mappable	0.31134664	8	edge	0.00096331133	0.000034291201	0.0199429995	0.07985064	0.07988493	160107	160107	34819969	34819969	0.82541896	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
12	38000003	133819926	NA	95819971	1304694	2.9962893	1298644	65813	167	mappable	0.31162500	8	edge	0.00007945420	0.000013915367	0.0033961342	0.07543235	0.07544627	38000003	38000003	133819926	133819926	0.88498881	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
13	19450038	60159977	NA	40709958	553212	3.0681339	550760	29758	42	mappable	0.31162500	2	edge	0.00096331133	0.000031046259	0.0181570005	0.07911743	0.07914848	19450038	19450038	60159914	60159977	0.85020823	2	814707.9	52.743886	0.9483735	27.71155	0.6604984	0.32099671	1.0416365	2.0264974	2	1	2:1	3	TCNneutral
13	60159978	108208714	NA	48048753	706006	2.9962893	703289	37992	111	mappable	0.31321102	8	self	0.00057326072	0.000024565196	0.0043049624	0.07837606	0.07840063	60159978	60160041	108208702	108208714	0.88025604	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
13	108208715	115099984	CTX	6891274	110314	2.9962893	109334	5721	108	mappable	0.31847500	8	edge	0.00373055891	0.000149253731	0.0342501210	0.08804235	0.08819161	108208715	108208778	115099984	115099984	0.88818941	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
14	20330060	107259908	NA	86929891	1220981	2.9962893	1215102	66614	121	mappable	0.31162500	8	edge	0.00109536373	0.000013794435	0.0006537282	0.07583413	0.07584793	20330060	20330060	107259908	107259908	0.86021684	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
15	20850000	20859924	NA	9925	165	2.9942500	151	0	3	mappable	NA	NA	edge	0.08378505154	0.071428571429	0.0029429995	0.15063813	0.22206670	20850000	20850000	20859924	20859924	NA	missing	1580108.0	NA	0.9274000	NA	NA	NA	NA	NA	NA	NA	NA	NA	TCNneutral
15	22840024	23069956	NA	229934	3437	3.1768833	3425	209	0	mappable	0.33441937	3	NA	0.02673126699	0.004524886878	0.0383570005	0.11229104	0.11681593	22840024	22840073	23069956	23069956	0.73305384	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
15	23710146	24329926	NA	619781	10365	3.1768833	10288	809	3	mappable	0.31590340	3	NA	0.00160644858	0.001129943503	0.0525570005	0.10394255	0.10507249	23710146	23710146	24329926	24329926	0.88924084	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
15	24329927	24830091	NA	500165	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	Inf	0.9303429995	0.10564099	Inf	24329927	24329927	24830091	24830091	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	NA	0	HomoDel
15	24830092	28529988	NA	3699897	57427	3.1768833	57198	3341	0	mappable	0.30716029	3	NA	0.00478831133	0.000280112045	0.0727570005	0.09166300	0.09194312	24830092	24830092	28529988	28529988	0.82563315	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
15	29100034	30369914	NA	1269881	18293	3.0681339	18222	1376	6	mappable	0.29926667	2	NA	0.01250154662	0.000691085003	0.0403570005	0.09863751	0.09932860	29100034	29100034	30369914	30369914	0.83511825	2	814707.9	52.743886	0.9483735	27.71155	0.6604984	0.32099671	1.0416365	2.0264974	2	1	2:1	3	TCNneutral
15	31160110	82479795	NA	51319726	690748	2.9962893	688085	30099	41	mappable	0.31298766	8	self	0.00094249835	0.000030525031	0.0144299452	0.07808532	0.07811584	31160110	31160110	82479795	82479795	0.86573648	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
15	83211507	102399920	NA	19188426	296197	2.9962893	294986	15138	19	mappable	0.31847500	8	edge	0.00588668867	0.000061169562	0.0034429995	0.08266604	0.08272721	83211507	83211507	102399920	102399920	0.83901727	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
16	100010	5799998	NA	5700000	91653	2.9962893	90985	4546	24	mappable	0.31838553	8	edge	0.00555956101	0.000191791331	0.0147429995	0.08911651	0.08930830	100010	100010	5799947	5799998	0.85424315	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
16	5799999	16289940	NA	10489950	206837	3.1768833	205896	11294	26	mappable	0.32050994	3	NA	0.00588668867	0.000081732734	0.0498570005	0.08575408	0.08583582	5799999	5800050	16289940	16289940	0.88018393	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
16	16870104	18169896	NA	1299793	20494	3.1768833	20390	1050	4	mappable	0.31344968	3	NA	0.00713514677	0.000866551127	0.0407570005	0.09847438	0.09934093	16870104	16870104	18169896	18169896	0.91469120	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
16	18800044	29039945	NA	10239907	125363	3.1768833	124693	6743	5	mappable	0.30820000	3	NA	0.00438831133	0.000134898152	0.0388570005	0.08588225	0.08601715	18800044	18800044	29039945	29039945	0.87978599	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
16	29670028	31959970	NA	2289943	17560	3.0681339	17516	468	5	mappable	0.28901078	2	NA	0.02441053355	0.001953125000	0.0431570005	0.09466613	0.09661926	29670028	29670028	31959970	31959970	0.92109954	2	814707.9	52.743886	0.9483735	27.71155	0.6604984	0.32099671	1.0416365	2.0264974	2	1	2:1	3	TCNneutral
16	32520030	32649899	NA	129870	3149	3.2052614	2819	0	12	mappable	NA	NA	NA	0.25573867365	0.003030303030	0.0569570005	0.11773911	0.12076942	32520030	32520030	32649899	32649899	NA	missing	1146369.5	NA	0.9873000	NA	NA	NA	NA	NA	NA	NA	NA	NA	TCNneutral
16	34240045	35279959	NA	1039915	12796	4.3959432	12771	68	0	mappable	0.34064545	NA	NA	0.03876980556	0.010752688172	0.3949570005	0.10005986	0.11081255	34240045	34240114	35279959	35279959	0.60844471	2	808238.0	52.844792	1.3253000	19.67267	0.6633707	0.32674140	1.4798033	2.9161399	3	sub	3:sub	sub	DUP
16	46450014	90109969	NA	43659978	703949	2.9962893	700827	35569	105	mappable	0.31162500	8	edge	0.00008831309	0.000025846472	0.0019205456	0.07880280	0.07882865	46450014	46450014	90109969	90109969	0.85985692	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
17	20080	18239982	NA	18219912	232875	4.0498782	231583	11956	1	mappable	0.06160000	4	edge	0.25098831133	0.000075483092	0.2985570005	0.08292213	0.08299762	20080	20080	18239982	18239982	0.14474326	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
17	18750212	22239986	NA	3489777	25850	4.0498782	25129	1001	29	mappable	0.05860000	4	NA	0.25511425472	0.000580720093	0.2985570005	0.09201874	0.09259946	18750212	18750212	22239986	22239986	0.15999693	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
17	25390040	44279982	NA	18889955	211185	4.0498782	210070	11113	2	mappable	0.05890480	4	NA	0.25098831133	0.000081779522	0.3278570005	0.08274339	0.08282517	25390040	25390040	44279982	44279982	0.14456313	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
17	44790026	77010160	NA	32220154	413766	4.0498782	411784	22060	76	mappable	0.06160000	4	NA	0.25098831133	0.000041595608	0.3131508296	0.08018777	0.08022936	44790026	44790026	77010018	77010160	0.13611597	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
17	77010161	77010162	ITX	2	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	Inf	0.9303429995	2.00000000	Inf	77010161	77010161	77010162	77010162	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	NA	0	HomoDel
17	77010163	81149937	NA	4139775	63072	3.9315304	62504	3252	50	mappable	0.06120833	1	edge	0.25023093416	0.000261780105	0.2730263847	0.09098717	0.09124895	77010163	77010217	81149937	81149937	0.15438390	1	1075631.7	55.251535	1.1934667	NA	NA	0.00000000	1.9657652	1.9657652	2	2	2:2	4	DUP
18	130031	14119956	NA	13989930	212769	2.9962893	211915	12783	25	mappable	0.31262770	8	edge	0.00096331133	0.000073329911	0.0118570005	0.08425350	0.08432683	130031	130031	14119956	14119956	0.82845040	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
18	14119957	14910026	NA	790070	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	Inf	0.9303429995	0.10208446	Inf	14119957	14119957	14910026	14910026	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	NA	0	HomoDel
18	14910027	14929888	NA	19862	364	2.8068409	363	34	0	mappable	0.27909085	NA	NA	0.03349745894	0.028571428571	0.0561429995	0.14007836	0.16864978	14910027	14910027	14929888	14929888	0.98726928	2	820255.5	53.297159	0.8742000	30.26751	0.6643147	0.32862936	0.9422153	1.8646256	2	1	2:1	3	TCNneutral
18	18540053	40573951	NA	22033908	303126	2.9962893	301974	15396	34	mappable	0.31162500	8	NA	0.00228657385	0.000060433916	0.0031291754	0.08198999	0.08205042	18540053	18540053	40569988	40573951	0.88051696	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
18	40573952	40573952	ITX	1	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	Inf	0.9303429995	Inf	Inf	40573952	40573952	40573952	40573952	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	NA	0	HomoDel
18	40573953	78009968	NA	37436032	576912	2.9962893	574260	28744	131	mappable	0.31137500	8	edge	0.00247786062	0.000031852206	0.0003189984	0.07949781	0.07952967	40573953	40580056	78009968	78009968	0.85907403	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
19	260137	2380037	NA	2119902	29341	2.9962893	29034	1391	34	mappable	0.32102500	8	edge	0.00551168867	0.000589275192	0.0103429995	0.09516755	0.09575683	260137	260137	2379967	2380107	0.89162819	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
19	2380037	24465030	NA	22084998	225491	3.1768833	223727	13120	49	mappable	0.31534405	3	NA	0.00403957264	0.000067186240	0.0544511967	0.08197876	0.08204595	2379967	2380107	24459836	24470224	0.90931552	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
19	24465030	24569972	NA	104943	2589	3.9315304	2336	39	17	mappable	0.33509918	1	NA	0.25417344646	0.003424657534	0.2692570005	0.11990949	0.12333415	24459836	24470224	24569972	24569972	0.93886939	2	1075631.7	55.251535	1.1934667	29.07312	0.5146139	0.02922783	1.9083102	2.0232203	2	2	2:2	4	DUP
19	27750002	43209995	NA	15460002	197697	2.9962893	196731	8878	5	mappable	0.31763712	8	NA	0.00246168867	0.000101584722	0.0044429995	0.08374495	0.08384653	27750002	27750002	43209995	43209995	0.91785185	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
19	43209996	43800005	NA	590010	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	Inf	0.9303429995	0.10432761	Inf	43209996	43209996	43800005	43800005	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	NA	0	HomoDel
19	43800006	59089999	NA	15289999	163082	3.1768833	161961	8980	34	mappable	0.31162500	3	edge	0.00194222183	0.000099000099	0.0466469025	0.08380093	0.08389993	43800006	43800006	59089999	59089999	0.90856153	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
2	20016	31990058	NA	31970058	478448	3.9315304	476158	24377	104	mappable	0.06160000	1	edge	0.25098831133	0.000037499531	0.2638979316	0.08022393	0.08026143	20016	20016	31989993	31990058	0.13044145	1	1075631.7	55.251535	1.1934667	NA	NA	0.00000000	1.9657652	1.9657652	2	2	2:2	4	DUP
2	31990059	87059860	NA	55069833	832865	4.0498782	830104	39306	48	mappable	0.06177222	4	NA	0.25098831133	0.000023772168	0.3053909813	0.07777635	0.07780012	31990059	31990124	87059860	87059860	0.11737094	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
2	88330099	89229990	NA	899894	11886	3.9315304	11850	564	1	mappable	0.06216786	1	NA	0.25023831133	0.001666666667	0.2719570005	0.10111532	0.10278199	88330099	88330099	89229990	89229990	0.12516310	1	1075631.7	55.251535	1.1934667	NA	NA	0.00000000	1.9657652	1.9657652	2	2	2:2	4	DUP
2	89840102	90239998	NA	399897	914	4.0498782	901	17	10	mappable	0.10471630	4	NA	0.22139435848	0.033333333333	0.3281570005	0.10747332	0.14080666	89840102	89840102	90239998	90239998	NA	missing	1069187.6	54.865443	1.2270622	NA	NA	NA	NA	NA	NA	NA	NA	NA	DUP
2	95580145	96239991	NA	659847	4448	3.9315304	4431	22	2	mappable	0.04773622	1	NA	0.26237195794	0.025641025641	0.2624570005	0.10345663	0.12909766	95580145	95580145	96239991	96239991	NA	missing	1075631.7	55.251535	1.1934667	NA	NA	NA	NA	NA	NA	NA	NA	NA	DUP
2	96239992	96740020	NA	500029	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	Inf	0.9303429995	0.10564318	Inf	96239992	96239992	96740020	96740020	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	NA	0	HomoDel
2	96740021	132189994	NA	35449992	448910	4.0498782	447368	20745	40	mappable	0.06127237	4	NA	0.25098831133	0.000044871220	0.2850420042	0.07974710	0.07979197	96740021	96740021	132189994	132189994	0.12047262	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
2	132189995	133009999	NA	820005	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	Inf	0.9303429995	0.10180566	Inf	132189995	132189995	133009999	133009999	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	NA	0	HomoDel
2	133010000	238909958	NA	105900000	1437805	4.0498782	1431828	68907	164	mappable	0.06150897	4	NA	0.25098831133	0.000013354344	0.2893813444	0.07502402	0.07503738	133010000	133010000	238909910	238910006	0.12636627	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
2	238909958	242999969	NA	4090013	67350	3.9315304	66711	4435	76	mappable	0.06140000	1	edge	0.25015939923	0.000197083169	0.2326707822	0.09105945	0.09125653	238909910	238910006	242999969	242999969	0.12820482	1	1075631.7	55.251535	1.1934667	NA	NA	0.00000000	1.9657652	1.9657652	2	2	2:2	4	DUP
20	60479	25729738	NA	25669277	400754	2.9962893	399136	21619	38	mappable	0.31773289	8	edge	0.00454316410	0.000043040372	0.0138259192	0.08125609	0.08129913	60479	60479	25729738	25729738	0.83795805	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
20	29810057	62909989	NA	33099965	498321	2.9962893	496010	21807	124	mappable	0.31504202	8	edge	0.00216531321	0.000041462808	0.0241357315	0.08006301	0.08010447	29810057	29810057	62909989	62909989	0.85923966	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
21	10720001	11179964	NA	459965	5133	4.4551250	4800	0	42	mappable	NA	NA	edge	0.22417997799	0.003003003003	0.4117570005	0.10631984	0.10932284	10720001	10720001	11179964	11179964	NA	missing	2251098.4	NA	1.3421000	NA	NA	NA	NA	NA	NA	NA	NA	NA	DUP
21	15410077	41000061	NA	25589998	398598	4.0498782	396496	19185	23	mappable	0.06160000	4	NA	0.25098831133	0.000046977028	0.2955570005	0.08127083	0.08131780	15410077	15410077	40999945	41000177	0.13640602	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
21	41000061	48099931	NA	7099873	118544	3.9315304	117592	6567	110	mappable	0.06010000	1	edge	0.25152600441	0.000132996409	0.2440226470	0.08787593	0.08800892	40999945	41000177	48099931	48099931	0.15520850	1	1075631.7	55.251535	1.1934667	NA	NA	0.00000000	1.9657652	1.9657652	2	2	2:2	4	DUP
22	16850007	25420867	NA	8570870	86448	4.0498782	85879	4344	15	mappable	0.06295000	4	edge	0.25004053905	0.000203541624	0.2878570005	0.08683944	0.08704298	16850007	16850007	25399938	25420867	0.15418176	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
22	25420868	33289978	NA	7869122	99835	3.9315304	99315	5504	18	mappable	0.06160000	1	NA	0.25098831133	0.000166002656	0.2678570005	0.08730662	0.08747262	25420868	25441797	33289920	33290036	0.12549149	1	1075631.7	55.251535	1.1934667	NA	NA	0.00000000	1.9657652	1.9657652	2	2	2:2	4	DUP
22	33289978	46999996	NA	13710030	190290	4.0498782	189347	9025	17	mappable	0.05817500	4	NA	0.25098831133	0.000100321027	0.3278570005	0.08435712	0.08445744	33289920	33290036	46999982	46999996	0.13432043	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
22	46999997	51179984	NA	4179989	80276	3.9315304	79691	4385	96	mappable	0.05909412	1	edge	0.25200988577	0.000201207243	0.2581292438	0.09092948	0.09113068	46999997	47000011	51179984	51179984	0.13962521	1	1075631.7	55.251535	1.1934667	NA	NA	0.00000000	1.9657652	1.9657652	2	2	2:2	4	DUP
3	100074	16648793	NA	16548735	270723	2.9962893	269451	15613	29	mappable	0.31199286	8	edge	0.00045675600	0.000059224163	0.0002126478	0.08340208	0.08346130	100074	100074	16648779	16648793	0.82312683	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
3	16648794	90499969	CTX	73851209	1035192	2.9962893	1031550	47083	64	mappable	0.31162500	8	self	0.00073258770	0.000019714534	0.0074826364	0.07651660	0.07653632	16648794	16648796	90499969	90499969	0.89010309	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
3	93570175	122870704	NA	29300533	405853	2.9962893	404328	20609	62	mappable	0.31261064	8	self	0.00123731468	0.000045179362	0.0017763047	0.08063078	0.08067596	93570175	93570175	122870693	122870704	0.89094832	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
3	122870705	128891525	INV	6020825	78344	2.9962893	78035	4700	7	mappable	0.31326620	8	self	0.00197246626	0.000199640647	0.0136429995	0.08880391	0.08900356	122870705	122870721	128889883	128891525	0.87653229	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
3	128891526	142569924	INV	13678408	174102	3.1768833	173525	6853	0	mappable	0.31067500	3	identical	0.00096331133	0.000134589502	0.0393570005	0.08436897	0.08450356	128891526	128900360	142569806	142569924	0.82874352	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
3	142569925	197779892	NA	55209997	762416	2.9962893	759210	41527	52	mappable	0.31505000	8	edge	0.00052481377	0.000022354861	0.0054630656	0.07776526	0.07778761	142569925	142570043	197779892	197779892	0.88574707	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
4	50084	8939952	NA	8889881	146074	2.9962893	144898	7933	89	mappable	0.29814521	8	edge	0.01383847573	0.000109793588	0.0176268022	0.08664110	0.08675089	50084	50084	8939952	8939952	0.81487383	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
4	9800043	40349979	NA	30549949	476020	2.9962893	474178	26065	61	mappable	0.30219849	8	self	0.01032152522	0.000035833303	0.0032373518	0.08043542	0.08047126	9800043	9800043	40349954	40349979	0.87864761	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
4	40349980	49089961	NA	8739986	123539	3.0681339	123074	6536	17	mappable	0.30669559	2	NA	0.00781331133	0.000142836738	0.0246570005	0.08673328	0.08687612	40349980	40350005	49089961	49089961	0.88474372	2	814707.9	52.743886	0.9483735	27.71155	0.6604984	0.32099671	1.0416365	2.0264974	2	1	2:1	3	TCNneutral
4	52680564	190530007	NA	137849496	1914447	3.0681339	1906751	101186	213	mappable	0.29878697	2	NA	0.01375064811	0.000009184592	0.0164216195	0.07396855	0.07397773	52680564	52680564	190529988	190530026	0.86239273	2	814707.9	52.743886	0.9483735	27.71155	0.6604984	0.32099671	1.0416365	2.0264974	2	1	2:1	3	TCNneutral
4	190530007	190939997	NA	409991	8257	2.9962893	7791	192	31	mappable	0.31468971	8	edge	0.00588668867	0.001522070015	0.0200570005	0.10726603	0.10878810	190529988	190530026	190939997	190939997	0.81066331	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
5	50017	18920000	NA	18869994	298482	2.9962893	296889	15604	94	mappable	0.31505000	8	edge	0.00272617667	0.000058149677	0.0253783725	0.08274861	0.08280676	50017	50017	18919957	18920000	0.85832801	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
5	18920001	46399990	NA	27479995	391631	3.0681339	390050	21499	39	mappable	0.31665000	2	NA	0.00246168867	0.000043327556	0.0214570005	0.08093274	0.08097607	18920001	18920044	46399990	46399990	0.86203137	2	814707.9	52.743886	0.9483735	27.71155	0.6604984	0.32099671	1.0416365	2.0264974	2	1	2:1	3	TCNneutral
5	49470005	68829703	NA	19359707	256861	2.9962893	255814	14868	15	mappable	0.31403636	8	self	0.00246168867	0.000062833805	0.0055570005	0.08262225	0.08268509	49470005	49470005	68829703	68829703	0.89341616	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
5	70750153	180689979	NA	109939883	1531543	2.9962893	1525762	76049	20	mappable	0.31505000	8	edge	0.00246168867	0.000012220606	0.0153570005	0.07487233	0.07488455	70750153	70750153	180689979	180689979	0.89575128	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
6	201976	32439982	NA	32238028	481985	2.9962893	478906	29273	22	mappable	0.31288788	8	edge	0.00246168867	0.000030910946	0.0245429995	0.08018520	0.08021611	201976	201976	32429961	32439982	0.88063799	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
6	32439983	32534986	NA	95004	2856	3.6286932	2198	223	81	mappable	0.16813056	NA	identical	0.14792290037	0.001135073780	0.1771570005	0.12095042	0.12208550	32439983	32450004	32519968	32550004	0.67181026	2	1398520.8	83.373358	1.1075000	40.73461	0.6033806	0.20676126	1.4392100	2.1894832	2	sub	2:sub	sub	NA
6	32534986	58019982	NA	25485008	376062	2.9962893	371201	20828	158	mappable	0.31162500	8	self	0.00133868851	0.000038927167	0.0018058132	0.08129042	0.08132935	32519968	32550004	58019982	58019982	0.90592408	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
6	58610011	58769997	NA	159987	572	3.7058409	571	18	0	mappable	0.34783049	NA	NA	0.03343607892	0.052631578947	0.1990570005	0.11568989	0.16832147	58610011	58610011	58769997	58769997	NA	missing	806686.4	53.617107	1.1294000	NA	NA	NA	NA	NA	NA	NA	NA	NA	DUP
6	61890002	62114958	NA	224957	2816	3.1768833	2797	100	0	mappable	0.32629355	3	NA	0.01304888674	0.008403361345	0.0619570005	0.11249043	0.12089379	61890002	61890002	62049917	62114958	0.32878300	1	809370.4	52.767139	0.9792443	NA	NA	0.00000000	1.5884417	1.5884417	sub	sub	sub:sub	sub	TCNneutral
6	62259990	170899935	NA	108639986	1535844	2.9962893	1529540	79560	342	mappable	0.31505000	8	edge	0.00018830596	0.000011646460	0.0031307131	0.07492045	0.07493210	62259990	62260006	170899935	170899935	0.89255993	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
7	40386	44931175	NA	44890823	681785	4.0498782	678700	37879	57	mappable	0.06095435	4	edge	0.25098831133	0.000024411679	0.3018040021	0.07867846	0.07870287	40386	40386	44931066	44931175	0.13369918	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
7	44931176	44931176	ITX	1	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	Inf	0.9303429995	Inf	Inf	44931176	44931176	44931176	44931176	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	NA	0	HomoDel
7	44931177	57999988	NA	13068824	174129	3.9315304	173398	10038	19	mappable	0.06213397	1	NA	0.25081608910	0.000092859133	0.2704570005	0.08460371	0.08469657	44931177	44931217	57999988	57999988	0.11977433	1	1075631.7	55.251535	1.1934667	NA	NA	0.00000000	1.9657652	1.9657652	2	2	2:2	4	DUP
7	61835088	70558713	NA	8723630	86183	4.5696136	85434	4401	21	mappable	0.06209787	NA	NA	0.25098831133	0.000194174757	0.4442570005	0.08674345	0.08693762	61835088	61870177	70558488	70558713	0.15463155	1	1069394.0	55.027070	1.3746000	NA	NA	0.00000000	2.2848068	2.2848068	2	2	2:2	4	DUP
7	70558714	70558716	ITX	3	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	Inf	0.9303429995	1.26185951	Inf	70558714	70558714	70558716	70558716	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	NA	0	HomoDel
7	70558717	72229988	NA	1671273	22873	4.8697500	22763	1219	0	mappable	0.06038929	NA	NA	0.24940168342	0.000752445448	0.5294570005	0.09674681	0.09749926	70558717	70558726	72229988	72229988	0.14193550	1	1049612.6	53.925050	1.4598000	NA	NA	0.00000000	2.4348750	2.4348750	sub	sub	sub:sub	sub	DUP
7	72750118	74139961	NA	1389844	10253	4.5808864	10183	413	5	mappable	0.06105000	NA	NA	0.25118831133	0.002070393375	0.4474570005	0.09800803	0.10007842	72750118	72750118	74139961	74139961	0.12265502	1	1071532.2	54.842200	1.3778000	NA	NA	0.00000000	2.2904432	2.2904432	2	2	2:2	4	DUP
7	75160045	76059952	NA	899908	8433	4.4406818	8375	445	5	mappable	0.06038738	NA	NA	0.25118831133	0.001988071571	0.4076570005	0.10111521	0.10310328	75160045	75160045	76059952	76059952	0.14702955	1	1065556.0	54.771571	1.3380000	NA	NA	0.00000000	2.2203409	2.2203409	2	2	2:2	4	DUP
7	76810004	155520023	NA	78710056	1026067	4.0498782	1021561	51437	85	mappable	0.06160000	4	NA	0.25098831133	0.000017875337	0.2925913610	0.07624844	0.07626632	76810004	76810004	155519989	155520057	0.13509189	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
7	155520023	159119808	NA	3599786	64689	3.9315304	63942	3195	103	mappable	0.06027778	1	edge	0.25018028241	0.000253678336	0.2618367080	0.09182956	0.09208324	155519989	155520057	159119808	159119808	0.18765691	1	1075631.7	55.251535	1.1934667	NA	NA	0.00000000	1.9657652	1.9657652	2	2	2:2	4	DUP
8	170012	6919904	NA	6749910	193876	2.9962893	192546	11341	99	mappable	0.30715833	8	edge	0.00532272455	0.000078920369	0.0003190376	0.08815840	0.08823732	170012	170012	6919904	6919904	0.86722890	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
8	8100000	11859985	NA	3759992	79396	2.9962893	79173	3575	2	mappable	0.31844516	8	self	0.00588668867	0.000263296472	0.0047570005	0.09156546	0.09182875	8100000	8100000	11859985	11859985	0.91059391	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
8	12580042	43789991	NA	31209977	518659	2.9962893	516700	26025	18	mappable	0.31353302	8	self	0.00246168867	0.000035734706	0.0117570005	0.08033579	0.08037153	12580042	12580042	43789991	43789991	0.86519195	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
8	46880007	145090078	NA	98210099	1377036	2.9962893	1371543	69579	180	mappable	0.31505000	8	self	0.00161257849	0.000013320546	0.0044525905	0.07533136	0.07534468	46880007	46880007	145089995	145090078	0.90506627	2	814730.2	53.111475	0.9279789	28.32135	0.6657157	0.33143130	1.0016126	1.9946767	2	1	2:1	3	TCNneutral
8	145510002	146289988	NA	779988	10487	3.1768833	10430	248	5	mappable	0.30051620	3	edge	0.00781331133	0.003278688525	0.0571570005	0.10218109	0.10545978	145510002	145510055	146289988	146289988	0.92098681	2	809370.4	52.767139	0.9792443	26.66211	0.6649977	0.32999537	1.0642633	2.1126201	2	1	2:1	3	TCNneutral
9	200101	38769828	NA	38569758	646135	4.0498782	643597	34949	31	mappable	0.06177222	4	edge	0.25098831133	0.000026675914	0.2886333435	0.07936203	0.07938871	200101	200101	38769828	38769828	0.11866453	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
9	66840048	66849972	NA	9925	540	5.3157273	507	0	4	mappable	NA	NA	NA	0.25675433697	0.030303030303	0.6560570005	0.15063813	0.18094116	66840048	66840048	66849972	66849972	NA	missing	2093333.3	NA	1.5864000	NA	NA	NA	NA	NA	NA	NA	NA	NA	DUP
9	68410004	68419976	NA	9973	1130	3.7047841	1057	0	20	mappable	NA	NA	NA	0.05282808995	0.013698630137	0.1987570005	0.15055919	0.16425782	68410004	68410004	68419976	68419976	NA	missing	6605666.0	NA	1.1291000	NA	NA	NA	NA	NA	NA	NA	NA	NA	DUP
9	71030093	92249979	NA	21219898	292374	4.0498782	291254	15509	16	mappable	0.06177222	4	NA	0.25098831133	0.000060135907	0.2975570005	0.08217293	0.08223307	71030093	71030093	92249945	92249979	0.12640597	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
9	92850041	115590002	NA	22739976	310208	4.0498782	309031	16329	17	mappable	0.06160000	4	NA	0.25098831133	0.000057123272	0.2829570005	0.08183732	0.08189445	92850041	92850087	115589987	115590002	0.11431395	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
9	115590003	133020011	NA	17430023	236570	3.9315304	235393	12266	21	mappable	0.06179853	1	NA	0.25098831133	0.000074399226	0.2709570005	0.08314255	0.08321695	115590003	115590018	133019998	133020011	0.13290063	1	1075631.7	55.251535	1.1934667	NA	NA	0.00000000	1.9657652	1.9657652	2	2	2:2	4	DUP
9	133380026	139976389	NA	6596365	100858	3.9315304	100069	5151	67	mappable	0.06019569	1	NA	0.25098831133	0.000168378515	0.2639570005	0.08828759	0.08845597	133380026	133380104	139976370	139976389	0.14554667	1	1075631.7	55.251535	1.1934667	NA	NA	0.00000000	1.9657652	1.9657652	2	2	2:2	4	DUP
9	139976390	139976390	ITX	1	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	Inf	0.9303429995	Inf	Inf	139976390	139976390	139976390	139976390	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	NA	0	HomoDel
9	139976391	141019791	ITX	1043401	13713	4.0498782	13496	484	20	mappable	0.05993902	4	edge	0.25098831133	0.001426533524	0.2976570005	0.10003570	0.10146223	139976391	139976392	141019791	141019791	0.12685625	1	1069187.6	54.865443	1.2270622	NA	NA	0.00000000	2.0249391	2.0249391	2	2	2:2	4	DUP
X	2700027	18150114	NA	15450088	147477	1.0157443	147477	182	41	mappable	0.29107500	NA	NA	NA	NA	NA	NA	NA	2700027	2700027	18149963	18150265	0.06959690	1	279904.0	13.893784	0.6541000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	18150114	18560023	NA	409910	3191	1.1841307	3191	1	0	mappable	0.38095238	NA	NA	NA	NA	NA	NA	NA	18149963	18150265	18559945	18560101	NA	missing	284334.0	8.800813	0.7497000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	18560023	23725051	NA	5165029	50348	1.0377614	50348	33	6	mappable	0.13537353	NA	NA	NA	NA	NA	NA	NA	18559945	18560101	23719957	23725051	NA	missing	282373.2	12.549919	0.6666000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	23725052	24175153	NA	450102	2242	1.1712727	2242	1	1	mappable	0.62500000	NA	NA	NA	NA	NA	NA	NA	23725052	23730146	24169848	24180458	NA	missing	280388.5	5.257284	0.7424000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	24175153	40730009	NA	16554857	164969	1.0201477	164969	119	21	mappable	0.13695000	NA	NA	NA	NA	NA	NA	NA	24169848	24180458	40729977	40730009	0.25278002	1	280880.8	12.212208	0.6566000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	40730010	40939936	NA	209927	1595	1.2191818	1595	5	0	mappable	0.29617955	NA	NA	NA	NA	NA	NA	NA	40730010	40730042	40939815	40940057	NA	missing	288890.9	18.571558	0.7696000	NA	NA	NA	NA	NA	1	NA	1	1	TCNneutral
X	40939936	44210028	NA	3270093	27494	1.0175057	27494	17	3	mappable	0.15433929	NA	NA	NA	NA	NA	NA	NA	40939815	40940057	44209840	44210028	NA	missing	280690.0	11.695415	0.6551000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	44210029	44790039	NA	580011	3771	1.2260511	3771	4	1	mappable	0.10616461	NA	NA	NA	NA	NA	NA	NA	44210029	44210217	44789891	44790187	NA	missing	278133.1	8.401937	0.7735000	NA	NA	NA	NA	NA	1	NA	1	1	TCNneutral
X	44790039	47119911	NA	2329873	19400	1.0293068	19400	16	3	mappable	0.34587500	NA	NA	NA	NA	NA	NA	NA	44789891	44790187	47109799	47130023	NA	missing	280237.4	17.924277	0.6618000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	47119911	47449788	NA	329878	2210	1.1733864	2210	3	1	mappable	0.43987081	NA	NA	NA	NA	NA	NA	NA	47109799	47130023	47449572	47449788	NA	missing	280089.8	7.842515	0.7436000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	47449789	58319974	NA	10870186	64803	1.0557273	64803	70	15	mappable	0.21898690	NA	NA	NA	NA	NA	NA	NA	47449789	47450005	58319857	58319974	0.34903307	1	282241.0	11.538913	0.6768000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	58319975	58499983	NA	180009	3233	1.3364886	3233	0	0	mappable	NA	NA	NA	NA	NA	NA	NA	NA	58319975	58320092	58499983	58499983	NA	missing	279055.2	NA	0.8362000	NA	NA	NA	NA	NA	1	NA	1	1	TCNneutral
X	61750000	61919999	NA	170000	3403	1.5128011	3403	2	1	mappable	0.42352941	NA	NA	NA	NA	NA	NA	NA	61750000	61750000	61919994	61920004	NA	missing	275710.3	19.624086	0.9363000	NA	NA	NA	NA	NA	2	NA	2	2	TCNneutral
X	61919999	62050008	NA	130010	2331	1.1858920	2331	0	0	mappable	NA	NA	NA	NA	NA	NA	NA	NA	61919994	61920004	62049973	62050008	NA	missing	289277.1	NA	0.7507000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	62050009	65300027	NA	3250019	28522	1.0317727	28522	18	3	mappable	0.26367500	NA	NA	NA	NA	NA	NA	NA	62050009	62050044	65299864	65300027	NA	missing	279932.6	11.508339	0.6632000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	65300028	65309976	NA	9949	124	1.1871250	124	0	0	mappable	NA	NA	NA	NA	NA	NA	NA	NA	65300028	65300191	65309946	65310006	NA	missing	300131.7	NA	0.7514000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	65309976	69909976	NA	4600001	41166	1.0347670	41166	37	3	mappable	0.09907500	NA	NA	NA	NA	NA	NA	NA	65309946	65310006	69909827	69909976	0.21188745	1	281199.5	13.448672	0.6649000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	69909977	70249937	NA	339961	2308	1.2191818	2308	4	1	mappable	0.72410588	NA	NA	NA	NA	NA	NA	NA	69909977	69910126	70249869	70250005	NA	missing	283794.8	5.579248	0.7696000	NA	NA	NA	NA	NA	1	NA	1	1	TCNneutral
X	70249937	75109986	NA	4860050	30416	1.0518523	30416	36	6	mappable	0.06028806	NA	NA	NA	NA	NA	NA	NA	70249869	70250005	75109964	75109986	0.42338567	2	281493.1	12.350509	0.6746000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	75109987	75239980	NA	129994	1080	1.1712727	1080	0	1	mappable	NA	NA	NA	NA	NA	NA	NA	NA	75109987	75110009	75239957	75240003	NA	missing	292834.5	NA	0.7424000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	75239980	88459980	NA	13220001	136478	1.0460398	136478	105	17	mappable	0.09585000	NA	NA	NA	NA	NA	NA	NA	75239957	75240003	88459980	88459980	0.27748591	1	281520.8	12.512035	0.6713000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	88990017	89349936	NA	359920	1090	0.9976023	1090	1	0	mappable	0.22727273	NA	NA	NA	NA	NA	NA	NA	88990017	88990017	89349936	89349936	NA	missing	272275.9	10.519752	0.6438000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	89349937	90140198	NA	790262	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	NA	NA	NA	NA	89349937	89349937	90140198	90140198	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	0	0	HomoDel
X	90140199	91529952	NA	1389754	5102	1.0442784	5102	1	0	mappable	0.61538462	NA	NA	NA	NA	NA	NA	NA	90140199	90140199	91529952	91529952	NA	missing	283852.0	22.926509	0.6703000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	91529953	92379999	NA	850047	0	0.0000000	0	0	NA	mappable	NA	NA	NA	NA	NA	NA	NA	NA	91529953	91529953	92379999	92379999	NA	missing	NA	NA	0.0000000	NA	NA	0.00000000	0.0000000	0.0000000	0	0	0	0	HomoDel
X	92380000	114720014	NA	22340015	199147	1.0201477	199147	202	34	mappable	0.09927500	NA	NA	NA	NA	NA	NA	NA	92380000	92380000	114719982	114720046	0.13469763	1	280156.3	13.024506	0.6566000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	114720014	114949978	NA	229965	1657	1.1492557	1657	0	1	mappable	NA	NA	NA	NA	NA	NA	NA	NA	114719982	114720046	114889903	115010053	NA	missing	276610.9	NA	0.7299000	NA	NA	NA	NA	NA	1	NA	1	1	NA
X	114949978	154929639	NA	39979662	366289	1.0185625	366289	415	85	mappable	0.07872500	NA	NA	NA	NA	NA	NA	NA	114889903	115010053	154929639	154929639	0.22309001	1	281096.2	12.493163	0.6557000	NA	NA	NA	NA	NA	1	NA	1	1	NA
Y	2653090	2919837	NA	266748	293	2.1896932	293	0	0	mappable	NA	NA	NA	NA	NA	NA	NA	NA	2653090	2653090	2919837	2919837	NA	missing	532248.3	NA	1.3206000	NA	NA	NA	NA	NA	2	NA	2	2	NA
Y	3712028	3719919	NA	7892	141	1.3976080	141	118	1	mappable	0.32378225	NA	NA	NA	NA	NA	NA	NA	3712028	3712028	3719919	3719919	0.97986526	2	770234.3	26.130796	0.8709000	NA	NA	NA	NA	NA	1	NA	1	1	TCNneutral
Y	6420014	10029994	NA	3609981	4785	2.0325795	4785	31	2	mappable	0.07890868	NA	NA	NA	NA	NA	NA	NA	6420014	6420014	10029985	10029994	0.05792989	1	533966.0	27.202042	1.2314000	NA	NA	NA	NA	NA	2	NA	2	2	NA
Y	10029995	10069977	NA	39983	1291	2.5000455	1291	0	0	mappable	NA	NA	NA	NA	NA	NA	NA	NA	10029995	10030004	10069977	10069977	NA	missing	565126.8	NA	1.4968000	NA	NA	NA	NA	NA	3	NA	3	3	DUP
Y	13130467	19558992	NA	6428526	11926	2.1734886	11926	195	25	mappable	0.23344362	NA	NA	NA	NA	NA	NA	NA	13130467	13130467	19558992	19558992	0.43065191	2	601848.0	24.399243	1.3114000	NA	NA	NA	NA	NA	2	NA	2	2	NA
Y	20802956	23808171	NA	3005216	2842	2.0838352	2842	7	0	mappable	0.18627217	NA	NA	NA	NA	NA	NA	NA	20802956	20802956	23808171	23808171	NA	missing	528749.0	26.675624	1.2605000	NA	NA	NA	NA	NA	2	NA	2	2	NA
Y	24381338	24508205	NA	126868	228	2.1271648	228	0	0	mappable	NA	NA	NA	NA	NA	NA	NA	NA	24381338	24381338	24508205	24508205	NA	missing	529068.0	NA	1.2851000	NA	NA	NA	NA	NA	2	NA	2	2	NA
Y	28780461	28789809	NA	9349	78	2.0797841	78	7	1	mappable	0.16240844	NA	NA	NA	NA	NA	NA	NA	28780461	28780461	28789809	28789809	NA	missing	823405.7	34.905242	1.2582000	NA	NA	NA	NA	NA	2	NA	2	2	NA
